Aliases for LINC01619 Gene

Subcategory (RNA class) for LINC01619 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01619 Gene

  • Long Intergenic Non-Protein Coding RNA 1619 2 3 5
  • LINC01619 2 170
  • C12orf79 3 4
  • Uncharacterized Protein Encoded By LINC01619 4
  • Chromosome 12 Open Reading Frame 79 2
  • HSALNG0093042 169
  • NONHSAG011893 94

External Ids for LINC01619 Gene

Previous HGNC Symbols for LINC01619 Gene

  • C12orf79

Previous GeneCards Identifiers for LINC01619 Gene

  • GC12M091989

Summaries for LINC01619 Gene

GeneCards Summary for LINC01619 Gene

LINC01619 (Long Intergenic Non-Protein Coding RNA 1619) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01619 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01619 Gene

Genomics for LINC01619 Gene

GeneHancer (GH) Regulatory Elements for LINC01619 Gene


GeneHancers around LINC01619 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01619 Gene

Genomic Locations for LINC01619 Gene
chr12:91,974,186-92,142,914
(GRCh38/hg38)
Size:
168,729 bases
Orientation:
Minus strand
chr12:92,378,756-92,536,690
(GRCh37/hg19)
Size:
157,935 bases
Orientation:
Minus strand

Genomic View for LINC01619 Gene

Genes around LINC01619 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01619 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01619 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01619 Gene

Proteins for LINC01619 Gene

  • Protein details for LINC01619 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    G3V211-CL079_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01619
    Protein Accession:
    G3V211
    Secondary Accessions:
    • F8VRL5
    • F8VVU4

    Protein attributes for LINC01619 Gene

    Size:
    115 amino acids
    Molecular mass:
    13510 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LINC01619 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LINC01619 Gene

Post-translational modifications for LINC01619 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01619 Gene

Domains & Families for LINC01619 Gene

Protein Domains for LINC01619 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01619: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01619 Gene

Function for LINC01619 Gene

Phenotypes From GWAS Catalog for LINC01619 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01619 Gene

Localization for LINC01619 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01619 Gene

Pathways & Interactions for LINC01619 Gene

PathCards logo

SuperPathways for LINC01619 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01619 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01619 Gene

Drugs & Compounds for LINC01619 Gene

No Compound Related Data Available

Transcripts for LINC01619 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01619 Gene

No ASD Table

Relevant External Links for LINC01619 Gene

GeneLoc Exon Structure for
LINC01619
ECgene alternative splicing isoforms for
LINC01619

Expression for LINC01619 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01619 Gene:

LINC01619
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01619 Gene

Orthologs for LINC01619 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01619 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C12orf79 33
  • 99 (a)
OneToOne
LOC735687 32
  • 98.84 (n)
Species where no ortholog for LINC01619 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01619 Gene

ENSEMBL:
Gene Tree for LINC01619 (if available)
TreeFam:
Gene Tree for LINC01619 (if available)

Paralogs for LINC01619 Gene

No data available for Paralogs for LINC01619 Gene

Variants for LINC01619 Gene

Sequence variations from dbSNP and Humsavar for LINC01619 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000038624 -- 92,002,080(-) A/C intron_variant
rs1000043159 -- 92,127,544(-) A/G intron_variant
rs1000071991 -- 92,135,030(-) A/G intron_variant
rs1000087830 -- 92,084,706(-) G/A intron_variant
rs1000102280 -- 92,042,688(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01619 Gene

Variant ID Type Subtype PubMed ID
esv2662911 CNV deletion 23128226
esv2746193 CNV deletion 23290073
esv3309538 CNV mobile element insertion 20981092
esv3376866 CNV insertion 20981092
esv3630370 CNV loss 21293372
esv3630371 CNV loss 21293372
esv3630373 CNV gain 21293372
nsv1050339 CNV loss 25217958
nsv1138158 CNV deletion 24896259
nsv1145616 CNV deletion 24896259
nsv559760 CNV loss 21841781
nsv559761 CNV gain 21841781
nsv7234 OTHER inversion 18451855
nsv832488 CNV gain 17160897
nsv952463 CNV duplication 24416366

Variation tolerance for LINC01619 Gene

Gene Damage Index Score: 1.25; 25.09% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01619 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01619

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01619 Gene

Disorders for LINC01619 Gene

Additional Disease Information for LINC01619

No disorders were found for LINC01619 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01619 Gene

Publications for LINC01619 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 56
  2. Long Noncoding RNA LINC01619 Regulates MicroRNA-27a/Forkhead Box Protein O1 and Endoplasmic Reticulum Stress-Mediated Podocyte Injury in Diabetic Nephropathy. (PMID: 29334763) Bai X … Liu X (Antioxidants & redox signaling 2018) 3 56
  3. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) Schizophrenia Working Group of the Psychiatric Genomics Consortium (Nature 2014) 3 56
  4. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer SE … Baylor College of Medicine Human Genome Sequencing Center Sequence Production Team (Nature 2006) 4 56
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

Products for LINC01619 Gene

Sources for LINC01619 Gene