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Aliases for LINC01617 Gene

Subcategory (RNA class) for LINC01617 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01617 Gene

  • Long Intergenic Non-Protein Coding RNA 1617 2 3
  • Chromosome 8 Open Reading Frame 23 2
  • Non-Protein Coding RNA 249 2
  • XLOC_006844 3
  • NCRNA00249 3
  • C8orf23 3

External Ids for LINC01617 Gene

Previous HGNC Symbols for LINC01617 Gene

  • C8orf23
  • NCRNA00249

Summaries for LINC01617 Gene

GeneCards Summary for LINC01617 Gene

LINC01617 (Long Intergenic Non-Protein Coding RNA 1617) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01617 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01617 Gene

Genomics for LINC01617 Gene

GeneHancer (GH) Regulatory Elements for LINC01617 Gene

Promoters and enhancers for LINC01617 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I073876 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 -0.3 -303 3.7 HDGF PKNOX1 ARNT ARID4B SIN3A ZBTB7B YY1 POLR2B ZNF143 SP3 UBE2W ENSG00000258677 LINC01617 TMEM70 ELOC RN7SL760P
GH08I073892 Enhancer 0.8 FANTOM5 ENCODE 0.4 +14.0 14027 0.4 HDAC1 MEIS2 USF1 BHLHE40 USF2 MITF ATF4 CTBP1 GATA3 IKZF1 ELOC TMEM70 STAU2 ENSG00000253596 GDAP1 UBE2W LINC01617 PIR51756
GH08I073895 Enhancer 0.7 Ensembl ENCODE 0.4 +16.6 16596 1.2 LEF1 ZBTB33 ZNF24 RUNX3 STAU2 PIR51756 LINC01617
GH08I073887 Enhancer 0.5 ENCODE 0.4 +9.3 9257 0.7 PKNOX1 ESRRA GATA3 PAX8 MNT ELOC TMEM70 STAU2 UBE2W LINC01617 PIR51756
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01617 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01617 Gene

Genomic Locations for LINC01617 Gene
25,730 bases
Plus strand

Genomic View for LINC01617 Gene

Genes around LINC01617 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01617 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01617 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01617 Gene

Proteins for LINC01617 Gene

Post-translational modifications for LINC01617 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01617 Gene

Domains & Families for LINC01617 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01617 Gene

Function for LINC01617 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01617 Gene

Localization for LINC01617 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01617 Gene

Pathways & Interactions for LINC01617 Gene

SuperPathways for LINC01617 Gene

No Data Available

Interacting Proteins for LINC01617 Gene

Gene Ontology (GO) - Biological Process for LINC01617 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01617 Gene

Drugs & Compounds for LINC01617 Gene

No Compound Related Data Available

Transcripts for LINC01617 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01617 Gene

No ASD Table

Relevant External Links for LINC01617 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

No data available for mRNA/cDNA for LINC01617 Gene

Expression for LINC01617 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01617 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01617 Gene

Orthologs for LINC01617 Gene

No data available for Orthologs and Evolution for LINC01617 Gene

Paralogs for LINC01617 Gene

No data available for Paralogs for LINC01617 Gene

Variants for LINC01617 Gene

Sequence variations from dbSNP and Humsavar for LINC01617 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000037088 -- 73,895,869(+) C/G/T genic_downstream_transcript_variant, intron_variant
rs1000290765 -- 73,889,326(+) T/A genic_downstream_transcript_variant, intron_variant
rs1000331009 -- 73,883,297(+) T/C downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000465291 -- 73,882,828(+) T/C intron_variant, non_coding_transcript_variant
rs1000497645 -- 73,901,719(+) G/A genic_downstream_transcript_variant, intron_variant

Additional Variant Information for LINC01617 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01617 Gene

Disorders for LINC01617 Gene

Additional Disease Information for LINC01617

No disorders were found for LINC01617 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01617 Gene

Publications for LINC01617 Gene

  1. Circulating lncRNAs associated with occurrence of colorectal cancer progression. (PMID: 26328256) Shi J … Hu S (American journal of cancer research 2015) 2 3 58

Products for LINC01617 Gene

Sources for LINC01617 Gene

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