Aliases for LINC01612 Gene

Subcategory (RNA class) for LINC01612 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01612 Gene

  • Long Intergenic Non-Protein Coding RNA 1612 2 3 5
  • LINC01612 2 5 165
  • TCONS_00008319 2 3
  • RP11-789C1.1 2 3
  • NONHSAG039317.2 91
  • HSALNG0038513 164

External Ids for LINC01612 Gene

Summaries for LINC01612 Gene

GeneCards Summary for LINC01612 Gene

LINC01612 (Long Intergenic Non-Protein Coding RNA 1612) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01612 include Gastric Cancer and Cortical Dysplasia, Complex, With Other Brain Malformations 6.

Additional gene information for LINC01612 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01612 Gene

Genomics for LINC01612 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01612 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J170259 Enhancer 0.7 ENCODE 0.3 +33.5 33506 0.2 GATAD2A CTCF TEAD4 ZNF143 RXRB REST RAD21 IRF2 TRIM22 CEBPA piR-57195-176 LINC01612 AADAT
GH04J170228 Enhancer 0.3 Ensembl 0.7 +3.0 2952 0.8 EZH2 LINC01612 piR-57195-176 AADAT
GH04J170243 Enhancer 0.4 Ensembl ENCODE 0.4 +17.5 17482 2.3 ESR1 AADAT LINC01612 piR-57195-176
GH04J170247 Enhancer 0.4 Ensembl 0.4 +21.8 21752 1.6 SP1 GABPA HNF4A LINC01612 piR-57195-176 AADAT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01612 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01612 Gene

Genomic Locations for LINC01612 Gene
chr4:170,226,249-170,283,976
(GRCh38/hg38)
Size:
57,728 bases
Orientation:
Plus strand
chr4:171,195,070-171,204,230
(GRCh37/hg19)
Size:
9,161 bases
Orientation:
Plus strand

Genomic View for LINC01612 Gene

Genes around LINC01612 on UCSC Golden Path with GeneCards custom track
LINC01612 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01612 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01612 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01612 Gene

Proteins for LINC01612 Gene

Post-translational modifications for LINC01612 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01612 Gene

Domains & Families for LINC01612 Gene

Gene Families for LINC01612 Gene

genes like me logo Genes that share domains with LINC01612: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01612 Gene

Function for LINC01612 Gene

Phenotypes From GWAS Catalog for LINC01612 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01612 Gene

Localization for LINC01612 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01612 Gene

Pathways & Interactions for LINC01612 Gene

PathCards logo

SuperPathways for LINC01612 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01612 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01612 Gene

Drugs & Compounds for LINC01612 Gene

No Compound Related Data Available

Transcripts for LINC01612 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01612 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E3F2B_9606 lncRNA 1260 3

HGNC: 51837,

RefSeq: NR_125889,

LNCipedia: LINC01612:8,

URS0000EF39F0_9606 lncRNA 1569 1

Ensembl: ENST00000654867 (view in UCSC) ,

URS0000EECBC5_9606 lncRNA 1368 1

Ensembl: ENST00000657650 (view in UCSC) ,

URS0000EEF4E6_9606 lncRNA 1366 1

Ensembl: ENST00000660060 (view in UCSC) ,

URS0000EF4A37_9606 lncRNA 1316 1

Ensembl: ENST00000667527 (view in UCSC) ,

LINC01612 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01612 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01612 Gene

No ASD Table

Relevant External Links for LINC01612 Gene

GeneLoc Exon Structure for
LINC01612

Expression for LINC01612 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01612 Gene

Orthologs for LINC01612 Gene

Evolution for LINC01612 Gene

ENSEMBL:
Gene Tree for LINC01612 (if available)
TreeFam:
Gene Tree for LINC01612 (if available)

No data available for Orthologs for LINC01612 Gene

Paralogs for LINC01612 Gene

No data available for Paralogs for LINC01612 Gene

Variants for LINC01612 Gene

Additional dbSNP identifiers (rs#s) for LINC01612 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01612 Gene

Variant ID Type Subtype PubMed ID
esv3603135 CNV loss 21293372
nsv4603 CNV insertion 18451855
nsv472732 CNV novel sequence insertion 20440878
nsv483115 CNV gain 15286789
nsv830150 CNV gain 17160897

Additional Variant Information for LINC01612 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01612

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01612 Gene

Disorders for LINC01612 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC01612 Gene - From: LncRNADisease and DISEASES

- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01612: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01612 Gene

Publications for LINC01612 Gene

  1. Identification of differentially expressed signatures of long non-coding RNAs associated with different metastatic potentials in gastric cancer. (PMID: 26045391) Song W … He YL (Journal of gastroenterology 2016) 2 3
  2. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3

Products for LINC01612 Gene

Sources for LINC01612 Gene