Aliases for LINC01605 Gene

Subcategory (RNA class) for LINC01605 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01605 Gene

  • Long Intergenic Non-Protein Coding RNA 1605 2 3 5
  • LINC01605 2 168
  • TCONS_00014973 3
  • NONHSAG049978 92
  • HSALNG0064563 167
  • LincDUSP 3

External Ids for LINC01605 Gene

Summaries for LINC01605 Gene

GeneCards Summary for LINC01605 Gene

LINC01605 (Long Intergenic Non-Protein Coding RNA 1605) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01605 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01605 Gene

Genomics for LINC01605 Gene

GeneHancer (GH) Regulatory Elements for LINC01605 Gene

Promoters and enhancers for LINC01605 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01605 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01605 Gene

Genomic Locations for LINC01605 Gene
chr8:37,406,464-37,554,183
(GRCh38/hg38)
Size:
147,720 bases
Orientation:
Minus strand
chr8:37,278,859-37,411,701
(GRCh37/hg19)
Size:
132,843 bases
Orientation:
Minus strand

Genomic View for LINC01605 Gene

Genes around LINC01605 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01605 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01605 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01605 Gene

Proteins for LINC01605 Gene

Post-translational modifications for LINC01605 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01605 Gene

Domains & Families for LINC01605 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01605 Gene

Function for LINC01605 Gene

Phenotypes From GWAS Catalog for LINC01605 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01605 Gene

Localization for LINC01605 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01605 Gene

Pathways & Interactions for LINC01605 Gene

PathCards logo

SuperPathways for LINC01605 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01605 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01605 Gene

Drugs & Compounds for LINC01605 Gene

No Compound Related Data Available

Transcripts for LINC01605 Gene

mRNA/cDNA for LINC01605 Gene

22 RNACentral transcripts :
2 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
9 NONCODE transcripts :
7 LncBook transcripts :
19 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01605 Gene

No ASD Table

Relevant External Links for LINC01605 Gene

GeneLoc Exon Structure for
LINC01605

Expression for LINC01605 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01605

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01605 Gene

Orthologs for LINC01605 Gene

Evolution for LINC01605 Gene

ENSEMBL:
Gene Tree for LINC01605 (if available)
TreeFam:
Gene Tree for LINC01605 (if available)

No data available for Orthologs for LINC01605 Gene

Paralogs for LINC01605 Gene

No data available for Paralogs for LINC01605 Gene

Variants for LINC01605 Gene

Additional dbSNP identifiers (rs#s) for LINC01605 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01605 Gene

Variant ID Type Subtype PubMed ID
esv275450 CNV gain+loss 21479260
esv3336952 CNV duplication 20981092
esv3371945 CNV duplication 20981092
nsv1033252 CNV gain 25217958
nsv1115087 CNV deletion 24896259
nsv522883 CNV loss 19592680
nsv522913 CNV loss 19592680
nsv6160 CNV deletion 18451855
nsv831290 CNV gain 17160897
nsv831291 CNV gain 17160897
nsv831293 CNV gain 17160897
nsv831294 CNV gain 17160897

Additional Variant Information for LINC01605 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01605

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01605 Gene

Disorders for LINC01605 Gene

Additional Disease Information for LINC01605

No disorders were found for LINC01605 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01605 Gene

Publications for LINC01605 Gene

  1. Colon Cancer-Upregulated Long Non-Coding RNA lincDUSP Regulates Cell Cycle Genes and Potentiates Resistance to Apoptosis. (PMID: 29743621) Forrest ME … Khalil AM (Scientific reports 2018) 2 3 54
  2. High LINC01605 expression predicts poor prognosis and promotes tumor progression via up-regulation of MMP9 in bladder cancer. (PMID: 30054424) Qin Z … Zhang W (Bioscience reports 2018) 3 54
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

Products for LINC01605 Gene

Sources for LINC01605 Gene