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Aliases for LINC01605 Gene

Subcategory (RNA class) for LINC01605 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01605 Gene

  • Long Intergenic Non-Protein Coding RNA 1605 2 3 5
  • TCONS_00014973 3

External Ids for LINC01605 Gene

Summaries for LINC01605 Gene

GeneCards Summary for LINC01605 Gene

LINC01605 (Long Intergenic Non-Protein Coding RNA 1605) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01605 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01605 Gene

Genomics for LINC01605 Gene

GeneHancer (GH) Regulatory Elements for LINC01605 Gene

Promoters and enhancers for LINC01605 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I037553 Enhancer 0.6 ENCODE 550.8 +0.2 205 0.2 L3MBTL2 ZNF189 GLIS1 KLF17 MZF1 ZNF600 ZNF18 ZBTB17 LINC01605 ENSG00000253414
GH08I037588 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -41.4 -41413 13.7 PKNOX1 FOXA2 MLX ARNT ARID4B NEUROD1 FEZF1 DMAP1 ZNF2 ZNF766 ZNF703 LOC105379379 LINC01605 ENSG00000253388 ENSG00000253414 DDHD2 LOC728024 ERLIN2 LOC102723701 RAB11FIP1
GH08I037603 Enhancer 1.4 Ensembl ENCODE dbSUPER 11 -50.3 -50320 1.2 PKNOX1 FOXA2 MLX ZNF493 ZNF133 ARID4B DMAP1 ZNF2 ZNF48 ETS1 DDHD2 RPS20P22 NSD3 ERLIN2 ADGRA2 LOC102723716 FGFR1 ENSG00000255201 ENSG00000260949 ENSG00000272128
GH08I037520 Enhancer 1.3 UCNEbase Ensembl ENCODE 11 +32.8 32829 1.9 HDGF MEIS2 PKNOX1 JUN FOSL1 CTBP1 POLR2A VEZF1 FOS TCF7L2 LOC105379379 LINC01605 ENSG00000253388 ZNF703 ENSG00000253414
GH08I037573 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.4 -20.3 -20293 1.3 PKNOX1 BACH1 BMI1 IRF4 RELA ATF7 ETV6 BCLAF1 IKZF2 RUNX3 LINC01605 ENSG00000254290 ENSG00000253414 ENSG00000253388 ZNF703 LOC102723701 ERLIN2 RAB11FIP1 LOC105379378 LOC105379379
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01605 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01605 Gene

Genomic Locations for LINC01605 Gene
chr8:37,406,464-37,554,183
(GRCh38/hg38)
Size:
147,720 bases
Orientation:
Minus strand
chr8:37,278,859-37,411,701
(GRCh37/hg19)

Genomic View for LINC01605 Gene

Genes around LINC01605 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01605 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01605 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01605 Gene

Proteins for LINC01605 Gene

Post-translational modifications for LINC01605 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01605 Gene

Domains & Families for LINC01605 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01605 Gene

Function for LINC01605 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01605 Gene

Localization for LINC01605 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01605 Gene

Pathways & Interactions for LINC01605 Gene

SuperPathways for LINC01605 Gene

No Data Available

Interacting Proteins for LINC01605 Gene

Gene Ontology (GO) - Biological Process for LINC01605 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01605 Gene

Drugs & Compounds for LINC01605 Gene

No Compound Related Data Available

Transcripts for LINC01605 Gene

mRNA/cDNA for LINC01605 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01605 Gene

No ASD Table

Relevant External Links for LINC01605 Gene

GeneLoc Exon Structure for
LINC01605
ECgene alternative splicing isoforms for
LINC01605

Expression for LINC01605 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01605 Gene:

LINC01605
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01605 Gene

Orthologs for LINC01605 Gene

Evolution for LINC01605 Gene

ENSEMBL:
Gene Tree for LINC01605 (if available)
TreeFam:
Gene Tree for LINC01605 (if available)

No data available for Orthologs for LINC01605 Gene

Paralogs for LINC01605 Gene

No data available for Paralogs for LINC01605 Gene

Variants for LINC01605 Gene

Sequence variations from dbSNP and Humsavar for LINC01605 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000005374 -- 37,425,201(-) T/A genic_downstream_transcript_variant, intron_variant
rs1000008810 -- 37,430,562(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000022464 -- 37,522,227(-) C/T upstream_transcript_variant
rs1000057163 -- 37,512,867(-) C/T genic_downstream_transcript_variant, genic_upstream_transcript_variant
rs1000094209 -- 37,503,146(-) C/T genic_downstream_transcript_variant, genic_upstream_transcript_variant

Additional Variant Information for LINC01605 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01605

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01605 Gene

Disorders for LINC01605 Gene

Additional Disease Information for LINC01605

No disorders were found for LINC01605 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01605 Gene

Publications for LINC01605 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01605 Gene

Sources for LINC01605 Gene

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