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Aliases for LINC01602 Gene

Subcategory (RNA class) for LINC01602 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01602 Gene

  • Long Intergenic Non-Protein Coding RNA 1602 2 3 5
  • T1560 3

External Ids for LINC01602 Gene

Summaries for LINC01602 Gene

GeneCards Summary for LINC01602 Gene

LINC01602 (Long Intergenic Non-Protein Coding RNA 1602) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01602 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01602 Gene

Genomics for LINC01602 Gene

GeneHancer (GH) Regulatory Elements for LINC01602 Gene

Promoters and enhancers for LINC01602 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I057860 Enhancer 1 FANTOM5 Ensembl ENCODE 9.3 -116.8 -116756 1.6 CTCF RXRA MAX REST RAD21 YY1 JUND HNF4G HNF4A LINC01602 GC08P057857 LOC105375856 ENSG00000253376 GC08M057799
GH08I057854 Enhancer 0.7 ENCODE 9.6 -122.9 -122933 1.1 ELF3 PKNOX1 FOXA2 TAF1 MAX FEZF1 RAD21 RARA YY1 CTBP1 LOC105375856 GC08P057857 LINC01602 GC08M057825 GC08M057799
GH08I057933 Enhancer 0.7 Ensembl ENCODE 0.3 -44.4 -44357 0.8 POLR2A JUNB BATF MYC RUNX3 FAM110B GC08P057898 LINC01602 LOC105375856 GC08M057799
GH08I057987 Enhancer 0.5 ENCODE 0.4 +9.6 9606 1.4 FOXA2 JUND RXRA HNF4A REST RAD21 LINC01602 GC08P057996 GC08M057799
GH08I057930 Enhancer 0.9 Ensembl ENCODE 0.2 -47.0 -46976 1.1 TEAD4 TAL1 MAX MZF1 FEZF1 ZIC2 TCF12 NCOR1 ZNF366 CBFA2T2 GC08P057898 LINC01602 LOC105375856 GC08M057799
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01602 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01602 Gene

Genomic Locations for LINC01602 Gene
chr8:57,978,358-57,984,126
(GRCh38/hg38)
Size:
5,769 bases
Orientation:
Plus strand

Genomic View for LINC01602 Gene

Genes around LINC01602 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01602 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01602 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01602 Gene

Proteins for LINC01602 Gene

Post-translational modifications for LINC01602 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01602 Gene

Domains & Families for LINC01602 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01602 Gene

Function for LINC01602 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01602 Gene

Localization for LINC01602 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01602 Gene

Pathways & Interactions for LINC01602 Gene

SuperPathways for LINC01602 Gene

No Data Available

Interacting Proteins for LINC01602 Gene

Gene Ontology (GO) - Biological Process for LINC01602 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01602 Gene

Drugs & Compounds for LINC01602 Gene

No Compound Related Data Available

Transcripts for LINC01602 Gene

mRNA/cDNA for LINC01602 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01602 Gene

No ASD Table

Relevant External Links for LINC01602 Gene

GeneLoc Exon Structure for
LINC01602
ECgene alternative splicing isoforms for
LINC01602

Expression for LINC01602 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01602 Gene:

LINC01602
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01602 Gene

Orthologs for LINC01602 Gene

Evolution for LINC01602 Gene

ENSEMBL:
Gene Tree for LINC01602 (if available)
TreeFam:
Gene Tree for LINC01602 (if available)

No data available for Orthologs for LINC01602 Gene

Paralogs for LINC01602 Gene

No data available for Paralogs for LINC01602 Gene

Variants for LINC01602 Gene

Sequence variations from dbSNP and Humsavar for LINC01602 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000051649 -- 57,978,535(+) C/A intron_variant
rs1000851181 -- 57,976,529(+) G/A/T upstream_transcript_variant
rs1000914990 -- 57,977,022(+) G/A upstream_transcript_variant
rs1000986574 -- 57,976,741(+) G/A upstream_transcript_variant
rs1001105633 -- 57,979,380(+) CTACT/CT intron_variant

Additional Variant Information for LINC01602 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01602

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01602 Gene

Disorders for LINC01602 Gene

Additional Disease Information for LINC01602

No disorders were found for LINC01602 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01602 Gene

Publications for LINC01602 Gene

  1. TTF-2 stimulates expression of 17 genes, including one novel thyroid-specific gene which might be involved in thyroid development. (PMID: 15223130) Hishinuma A … Ieiri T (Molecular and cellular endocrinology 2004) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01602 Gene

Sources for LINC01602 Gene

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