Aliases for LINC01597 Gene

Subcategory (RNA class) for LINC01597 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01597 Gene

  • Long Intergenic Non-Protein Coding RNA 1597 2 3 5
  • LINC01597 2 168
  • NONHSAG031562 92
  • NONHSAG031563 92
  • HSALNG0129452 167

External Ids for LINC01597 Gene

Previous GeneCards Identifiers for LINC01597 Gene

  • GC20U901044

Summaries for LINC01597 Gene

GeneCards Summary for LINC01597 Gene

LINC01597 (Long Intergenic Non-Protein Coding RNA 1597) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01597 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01597 Gene

Genomics for LINC01597 Gene

GeneHancer (GH) Regulatory Elements for LINC01597 Gene

Promoters and enhancers for LINC01597 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J030287 Promoter/Enhancer 1.2 Ensembl ENCODE 508.8 +0.4 382 3.2 CTCF AFF1 TAF9B ZNF341 NFRKB ZNF282 ARNT PBX2 POLR2A TRIM24 LINC01597 piR-31162-293 piR-46662-394 piR-56759-333 piR-54764-384 piR-61029-092 piR-55650-392 FRG1BP piR-50718-002
GH20J030376 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 7.6 -87.4 -87433 4 ZNF217 CTCF NRF1 POLR2G SP1 NONO PHF8 ZFX POLR2A CLOCK FRG1BP lnc-DEFB115-5 LINC01597 RF00951-087
GH20J030283 Promoter/Enhancer 0.6 FANTOM5 CraniofacialAtlas 7.6 +6.0 5972 0.5 piR-45124 piR-45240-001 piR-45240-002 LINC01597 MLLT10P1
GH20J030382 Enhancer 0.6 Ensembl 6.7 -94.2 -94233 4 TSC22D4 CHD1 HINFP CEBPG BCLAF1 CTCF PRDM10 ATF4 FOXK2 TOE1 FRG1BP FAM242A MLLT10P1 LINC01597 lnc-DEFB115-5 RF00951-087
GH20J031245 Enhancer 0.3 FANTOM5 7 -955.9 -955880 0.4 SREBF1 LINC01597 DEFB116 DEFB121 DEFB115 lnc-DEFB115-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01597 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01597 Gene

Genomic Locations for LINC01597 Gene
chr20:30,273,265-30,289,968
(GRCh38/hg38)
Size:
16,704 bases
Orientation:
Minus strand
chr20:29,513,582-29,521,213
(GRCh37/hg19)
Size:
7,632 bases
Orientation:
Minus strand

Genomic View for LINC01597 Gene

Genes around LINC01597 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01597 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01597 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01597 Gene

Proteins for LINC01597 Gene

Post-translational modifications for LINC01597 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01597 Gene

Domains & Families for LINC01597 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01597 Gene

Function for LINC01597 Gene

Phenotypes for LINC01597 Gene

GenomeRNAi human phenotypes for LINC01597:
genes like me logo Genes that share phenotypes with LINC01597: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01597 Gene

Localization for LINC01597 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01597 Gene

Pathways & Interactions for LINC01597 Gene

PathCards logo

SuperPathways for LINC01597 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01597 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01597 Gene

Drugs & Compounds for LINC01597 Gene

No Compound Related Data Available

Transcripts for LINC01597 Gene

mRNA/cDNA for LINC01597 Gene

14 RNACentral transcripts :
2 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
8 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01597 Gene

No ASD Table

Relevant External Links for LINC01597 Gene

GeneLoc Exon Structure for
LINC01597

Expression for LINC01597 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01597

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01597 Gene

Orthologs for LINC01597 Gene

Evolution for LINC01597 Gene

ENSEMBL:
Gene Tree for LINC01597 (if available)
TreeFam:
Gene Tree for LINC01597 (if available)

No data available for Orthologs for LINC01597 Gene

Paralogs for LINC01597 Gene

No data available for Paralogs for LINC01597 Gene

Variants for LINC01597 Gene

Additional dbSNP identifiers (rs#s) for LINC01597 Gene

Additional Variant Information for LINC01597 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01597

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01597 Gene

Disorders for LINC01597 Gene

Additional Disease Information for LINC01597

No disorders were found for LINC01597 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01597 Gene

Publications for LINC01597 Gene

No publications were found for LINC01597 Gene.

Products for LINC01597 Gene

Sources for LINC01597 Gene