Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01596 Gene

Subcategory (RNA class) for LINC01596 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01596 Gene

  • Long Intergenic Non-Protein Coding RNA 1596 2 3 5
  • TCONS_00007705 3

External Ids for LINC01596 Gene

Previous GeneCards Identifiers for LINC01596 Gene

  • GC00U936216

Summaries for LINC01596 Gene

GeneCards Summary for LINC01596 Gene

LINC01596 (Long Intergenic Non-Protein Coding RNA 1596) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01596 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01596 Gene

Genomics for LINC01596 Gene

GeneHancer (GH) Regulatory Elements for LINC01596 Gene

Promoters and enhancers for LINC01596 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I189881 Enhancer 0.2 ENCODE 550.8 -0.2 -154 0.2 LINC01596 FRG1-DT GC04P189824
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01596 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01596 Gene

Genomic Locations for LINC01596 Gene
chr4:189,881,515-189,888,086
(GRCh38/hg38)
Size:
6,572 bases
Orientation:
Plus strand

Genomic View for LINC01596 Gene

Genes around LINC01596 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01596 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01596 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01596 Gene

Proteins for LINC01596 Gene

Post-translational modifications for LINC01596 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01596 Gene

Domains & Families for LINC01596 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01596 Gene

Function for LINC01596 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01596 Gene

Localization for LINC01596 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01596 Gene

Pathways & Interactions for LINC01596 Gene

SuperPathways for LINC01596 Gene

No Data Available

Interacting Proteins for LINC01596 Gene

Gene Ontology (GO) - Biological Process for LINC01596 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01596 Gene

Drugs & Compounds for LINC01596 Gene

No Compound Related Data Available

Transcripts for LINC01596 Gene

mRNA/cDNA for LINC01596 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01596 Gene

No ASD Table

Relevant External Links for LINC01596 Gene

GeneLoc Exon Structure for
LINC01596
ECgene alternative splicing isoforms for
LINC01596

Expression for LINC01596 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01596 Gene:

LINC01596
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01596 Gene

Orthologs for LINC01596 Gene

Evolution for LINC01596 Gene

ENSEMBL:
Gene Tree for LINC01596 (if available)
TreeFam:
Gene Tree for LINC01596 (if available)

No data available for Orthologs for LINC01596 Gene

Paralogs for LINC01596 Gene

No data available for Paralogs for LINC01596 Gene

Variants for LINC01596 Gene

Sequence variations from dbSNP and Humsavar for LINC01596 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1002528747 -- 189,880,093(+) C/A/G upstream_transcript_variant
rs10028768 -- 189,880,252(+) C/A/G upstream_transcript_variant
rs1003094400 -- 189,884,406(+) C/T intron_variant
rs1003675211 -- 189,883,431(+) T/C intron_variant
rs1004290978 -- 189,884,815(+) A/G non_coding_transcript_variant

Additional Variant Information for LINC01596 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01596

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01596 Gene

Disorders for LINC01596 Gene

Additional Disease Information for LINC01596

No disorders were found for LINC01596 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01596 Gene

Publications for LINC01596 Gene

No publications were found for LINC01596 Gene.

Products for LINC01596 Gene

Sources for LINC01596 Gene

Content
Loading form....