Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01595 Gene

Subcategory (RNA class) for LINC01595 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01595 Gene

  • Long Intergenic Non-Protein Coding RNA 1595 2 3 5

External Ids for LINC01595 Gene

Previous GeneCards Identifiers for LINC01595 Gene

  • GC00U936287

Summaries for LINC01595 Gene

GeneCards Summary for LINC01595 Gene

LINC01595 (Long Intergenic Non-Protein Coding RNA 1595) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01595 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01595 Gene

Genomics for LINC01595 Gene

GeneHancer (GH) Regulatory Elements for LINC01595 Gene

Promoters and enhancers for LINC01595 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J047869 Enhancer 1 Ensembl ENCODE 610 +0.4 358 0.4 CTCF CREM ZNF384 CREB1 GLIS2 PRDM10 GATAD2A ATF1 ZNF143 REST LINC01595 FUT2 GC19P047861
GH19J047884 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 19.2 -16.2 -16215 3.1 ZNF652 CEBPG RERE TFE3 SP1 PPARG ZNF384 KAT8 HMG20B RXRA SULT2A1 LINC01595
GH19J047890 Enhancer 1.2 Ensembl ENCODE 16.8 -22.5 -22531 3 ZFX SP1 CC2D1A ELF3 ZKSCAN8 CBFA2T2 ZNF148 POLR2A MLLT1 GTF2F1 LINC01595 BICRA ZC3H4 GRWD1 RASIP1 CCDC9 SULT2A1 SNAR-A12
GH19J047848 Promoter/Enhancer 1.3 Ensembl ENCODE 11.7 +20.0 19955 2 SP1 CTCF ZNF121 ZNF384 DPF2 ZNF512 ATF1 PATZ1 MTA2 NR2C1 ZC3H4 GRWD1 BICRA NOP53-AS1 KDELR1 CCDC9 LINC01595 CYTH2 NOP53 RPL18
GH19J047819 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 5.8 +49.2 49159 4.8 SP1 MCM2 IKZF1 PKNOX1 CTBP1 YBX1 ZNF580 ZBTB17 IRF4 ZNF366 TPRX1 GC19P047825 GC19P047824 GC19P047823 GC19P047822 GC19P047821 GC19P047820 CRX ZC3H4 SELENOW
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01595 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01595 Gene

Genomic Locations for LINC01595 Gene
chr19:47,863,251-47,869,359
(GRCh38/hg38)
Size:
6,109 bases
Orientation:
Minus strand

Genomic View for LINC01595 Gene

Genes around LINC01595 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01595 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01595 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01595 Gene

Proteins for LINC01595 Gene

Post-translational modifications for LINC01595 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01595 Gene

Domains & Families for LINC01595 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01595 Gene

Function for LINC01595 Gene

Phenotypes From GWAS Catalog for LINC01595 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01595 Gene

Localization for LINC01595 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01595 Gene

Pathways & Interactions for LINC01595 Gene

PathCards logo

SuperPathways for LINC01595 Gene

No Data Available

Interacting Proteins for LINC01595 Gene

Gene Ontology (GO) - Biological Process for LINC01595 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01595 Gene

Drugs & Compounds for LINC01595 Gene

No Compound Related Data Available

Transcripts for LINC01595 Gene

mRNA/cDNA for LINC01595 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01595 Gene

No ASD Table

Relevant External Links for LINC01595 Gene

GeneLoc Exon Structure for
LINC01595
ECgene alternative splicing isoforms for
LINC01595

Expression for LINC01595 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01595 Gene:

LINC01595
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01595 Gene

Orthologs for LINC01595 Gene

Evolution for LINC01595 Gene

ENSEMBL:
Gene Tree for LINC01595 (if available)
TreeFam:
Gene Tree for LINC01595 (if available)

No data available for Orthologs for LINC01595 Gene

Paralogs for LINC01595 Gene

No data available for Paralogs for LINC01595 Gene

Variants for LINC01595 Gene

Sequence variations from dbSNP and Humsavar for LINC01595 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000149229 -- 47,867,072(-) A/T intron_variant
rs1000209491 -- 47,866,530(-) C/T intron_variant
rs1000422451 -- 47,866,122(-) T/G intron_variant
rs1000812706 -- 47,865,248(-) C/T intron_variant
rs1000880450 -- 47,866,456(-) C/A intron_variant

Additional Variant Information for LINC01595 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01595

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01595 Gene

Disorders for LINC01595 Gene

No disorders were found for LINC01595 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01595 Gene

Publications for LINC01595 Gene

  1. Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. (PMID: 11752456) Xu XR … Han ZG (Proceedings of the National Academy of Sciences of the United States of America 2001) 3 58

Products for LINC01595 Gene

Sources for LINC01595 Gene

Content
Loading form....