LINC01574 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1574

GC05P176743
GIFtS:
13

Aliases for LINC01574 Gene

Subcategory (RNA class) for LINC01574 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01574 Gene

  • Long Intergenic Non-Protein Coding RNA 1574 2 3 5
  • Human Islet Long Non Coding RNA 12 2 3
  • LINC01574 2 170
  • TCONS_00009551 3
  • NONHSAG042334 94
  • HSALNG0046884 169
  • HI-LNC12 3

External Ids for LINC01574 Gene

Summaries for LINC01574 Gene

GeneCards Summary for LINC01574 Gene

LINC01574 (Long Intergenic Non-Protein Coding RNA 1574) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01574 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01574 Gene

Genomics for LINC01574 Gene

GeneHancer (GH) Regulatory Elements for LINC01574 Gene

Promoters and enhancers for LINC01574 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01574 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01574 Gene

Genomic Locations for LINC01574 Gene
chr5:176,743,059-176,751,448
(GRCh38/hg38)
Size:
8,390 bases
Orientation:
Plus strand
chr5:176,170,206-176,170,872
(GRCh37/hg19)
Size:
667 bases
Orientation:
Plus strand

Genomic View for LINC01574 Gene

Genes around LINC01574 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01574 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01574 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01574 Gene

Proteins for LINC01574 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01574 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01574 Gene

Domains & Families for LINC01574 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01574 Gene

Function for LINC01574 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01574 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01574 Gene

Localization for LINC01574 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01574 Gene

Pathways & Interactions for LINC01574 Gene

PathCards logo

SuperPathways for LINC01574 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01574 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01574 Gene

Drugs & Compounds for LINC01574 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01574 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01574 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(8) LNCipedia transcripts :
(4) LncBook transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01574 Gene

No ASD Table

Relevant External Links for LINC01574 Gene

GeneLoc Exon Structure for
LINC01574
ECgene alternative splicing isoforms for
LINC01574

Expression for LINC01574 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01574 Gene

mRNA expression in normal human tissues for LINC01574 Gene
mRNA expression by GTEx for LINC01574 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01574 Gene:

LINC01574
genes like me logo Genes that share expression patterns with LINC01574: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01574 Gene

Orthologs for LINC01574 Gene

Evolution for LINC01574 Gene

ENSEMBL:
Gene Tree for LINC01574 (if available)
TreeFam:
Gene Tree for LINC01574 (if available)

No data available for Orthologs for LINC01574 Gene

Paralogs for LINC01574 Gene

No data available for Paralogs for LINC01574 Gene

Variants for LINC01574 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LINC01574 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1001095051 -- 176,741,905(+) C/G upstream_transcript_variant
rs1003016800 -- 176,744,079(+) T/C downstream_transcript_variant
rs1003319038 -- 176,743,366(+) G/A non_coding_transcript_variant
rs1004030023 -- 176,743,183(+) G/A upstream_transcript_variant
rs1004466689 -- 176,742,857(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01574 Gene

Variant ID Type Subtype PubMed ID
dgv10180n54 CNV loss 21841781
esv2763524 CNV gain 21179565
nsv462557 CNV loss 19166990
nsv950723 CNV deletion 24416366

Additional Variant Information for LINC01574 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01574

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01574 Gene

Disorders for LINC01574 Gene

Additional Disease Information for LINC01574

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01574 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01574 Gene

Publications for LINC01574 Gene

  1. Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes. (PMID: 23040067) Morán I … Ferrer J (Cell metabolism 2012) 2 3 56

ExternalLinks

View latest publications for LINC01574 gene in Mastermind

Products for LINC01574 Gene

Sources for LINC01574 Gene