Aliases for LINC01568 Gene

Subcategory (RNA class) for LINC01568 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01568 Gene

  • Long Intergenic Non-Protein Coding RNA 1568 2 3 5
  • LINC01568 2 5 165
  • NONHSAG019956.2 91
  • NONHSAG019954.2 91
  • NONHSAG019955.2 91
  • HSALNG0112617 164
  • HSALNG0112623 164
  • HSALNG0112622 164

External Ids for LINC01568 Gene

Summaries for LINC01568 Gene

GeneCards Summary for LINC01568 Gene

LINC01568 (Long Intergenic Non-Protein Coding RNA 1568) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01568 include Endometrial Cancer.

Additional gene information for LINC01568 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01568 Gene

Genomics for LINC01568 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01568 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J073482 Promoter/Enhancer 1.5 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas 600.2 +96.9 96949 2.2 TEAD4 POLR2A SMARCA4 NANOG SP1 POU5F1 LINC01568 TRK-TTT1-1 piR-35462-002 lnc-PSMD7-6 ZFHX3 lnc-CLEC18B-44 LOC107984814
GH16J073387 Promoter 0.3 EPDnew 600.7 +0.3 263 0.1 LINC01568 piR-31199-130 ZFHX3 lnc-CLEC18B-44 LOC107984814
GH16J073385 Enhancer 0.2 Ensembl 600.7 -1.2 -1170 0.4 LINC01568 piR-43105-248 ZFHX3 lnc-CLEC18B-44 LOC107984814
GH16J073364 Enhancer 0.9 Ensembl ENCODE 0.4 -21.4 -21370 1.2 ATF7 ZNF692 ZNF561 SCRT2 ZBTB44 ZBTB20 ZXDB ZNF491 CREB1 ZBTB17 ENSG00000259972 ENSG00000239763 ENSG00000260884 LINC01568 piR-43105-248 ZFHX3 lnc-CLEC18B-44 LOC107984814
GH16J073400 Enhancer 0.6 Ensembl CraniofacialAtlas 0.4 +13.7 13680 0.9 KDM1A NR2C2 ZMYM3 GABPB1 NR2C1 ZFHX3 piR-31199-130 LINC01568 lnc-CLEC18B-9 lnc-CLEC18B-44 LOC107984814
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01568 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01568 Gene

Genomic Locations for LINC01568 Gene
chr16:73,386,771-73,504,954
(GRCh38/hg38)
Size:
118,184 bases
Orientation:
Plus strand
chr16:73,420,704-73,455,295
(GRCh37/hg19)
Size:
34,592 bases
Orientation:
Plus strand

Genomic View for LINC01568 Gene

Genes around LINC01568 on UCSC Golden Path with GeneCards custom track
LINC01568 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01568 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01568 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01568 Gene

Proteins for LINC01568 Gene

Post-translational modifications for LINC01568 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01568 Gene

Domains & Families for LINC01568 Gene

Gene Families for LINC01568 Gene

genes like me logo Genes that share domains with LINC01568: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01568 Gene

Function for LINC01568 Gene

Phenotypes From GWAS Catalog for LINC01568 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01568 Gene

Localization for LINC01568 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01568 Gene

Pathways & Interactions for LINC01568 Gene

PathCards logo

SuperPathways for LINC01568 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01568 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01568 Gene

Drugs & Compounds for LINC01568 Gene

No Compound Related Data Available

Transcripts for LINC01568 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01568 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EA4C_9606 lncRNA 1328 5

HGNC: 51371,

RefSeq: NR_038234,

LncBook: HSALNT0233397,

LNCipedia: LINC01568:2,

NONCODE: NONHSAT143633.2,

URS00001B23A5_9606 lncRNA 607 4

Ensembl: ENST00000561875 (view in UCSC) ,

LncBook: HSALNT0233408,

LNCipedia: LINC01568:8,

NONCODE: NONHSAT143637.2,

URS00004B2949_9606 lncRNA 577 4

Ensembl: ENST00000557393 (view in UCSC) ,

LncBook: HSALNT0233417,

LNCipedia: LINC01568:14,

NONCODE: NONHSAT143639.2,

URS00000A26F3_9606 lncRNA 2544 3

Ensembl: ENST00000554640 (view in UCSC) ,

LncBook: HSALNT0233405,

LNCipedia: LINC01568:6,

URS0000BDA835_9606 lncRNA 1480 3

Ensembl: ENST00000562748 (view in UCSC) ,

LncBook: HSALNT0233419,

LNCipedia: LINC01568:12,

LINC01568 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01568 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01568 Gene

No ASD Table

Relevant External Links for LINC01568 Gene

GeneLoc Exon Structure for
LINC01568

Expression for LINC01568 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01568 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01568

genes like me logo Genes that share expression patterns with LINC01568: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01568 Gene

Orthologs for LINC01568 Gene

Evolution for LINC01568 Gene

ENSEMBL:
Gene Tree for LINC01568 (if available)
TreeFam:
Gene Tree for LINC01568 (if available)

No data available for Orthologs for LINC01568 Gene

Paralogs for LINC01568 Gene

No data available for Paralogs for LINC01568 Gene

Variants for LINC01568 Gene

Additional dbSNP identifiers (rs#s) for LINC01568 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01568 Gene

Variant ID Type Subtype PubMed ID
esv2660608 CNV deletion 23128226
esv2665917 CNV deletion 23128226
esv2714688 CNV deletion 23290073
esv2714689 CNV deletion 23290073
esv3189346 CNV deletion 24192839
esv3639034 CNV loss 21293372
esv3639035 CNV loss 21293372
esv3639036 CNV loss 21293372
nsv1160431 CNV duplication 26073780
nsv7285 OTHER inversion 18451855
nsv833274 CNV loss 17160897

Additional Variant Information for LINC01568 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01568

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01568 Gene

Disorders for LINC01568 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01568 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
endometrial cancer
  • endometrial cancer, familial
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01568: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01568 Gene

Publications for LINC01568 Gene

  1. Novel genetic markers of breast cancer survival identified by a genome-wide association study. (PMID: 22232737) Shu XO … Zheng W (Cancer research 2012) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01568 Gene

Sources for LINC01568 Gene