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Aliases for LINC01567 Gene

Subcategory (RNA class) for LINC01567 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01567 Gene

  • Long Intergenic Non-Protein Coding RNA 1567 2 3 5
  • LncRNA Overexpressed In Colon Cancer Stem Cells 2 3
  • LOCCS 3

External Ids for LINC01567 Gene

Summaries for LINC01567 Gene

GeneCards Summary for LINC01567 Gene

LINC01567 (Long Intergenic Non-Protein Coding RNA 1567) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01567 include Colorectal Cancer.

Additional gene information for LINC01567 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01567 Gene

Genomics for LINC01567 Gene

GeneHancer (GH) Regulatory Elements for LINC01567 Gene

Promoters and enhancers for LINC01567 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J024668 Promoter/Enhancer 1.4 Ensembl ENCODE 600.7 +1.0 984 3.7 ZSCAN21 MAFK ZBTB7A SP7 PRDM1 IKZF1 CEBPG GLIS2 POLR2A PKNOX1 LINC01567 TNRC6A SLC5A11
GH16J024684 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 -15.0 -14972 2.5 ZNF652 SP1 PPARG RFX1 GATAD2A ZNF7 POLR2A ATF7 RFX3 BMI1 SLC5A11 LINC01567 TNRC6A GC16M024776
GH16J024728 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 0.2 -59.6 -59583 4.1 SP1 ZNF652 ELF3 ZFX MNT SIX5 ZNF148 NKRF CEBPG GTF2F1 RBBP6 SLC5A11 LCMT1-AS2 ENSG00000262587 ENSG00000261669 SCML2P2 GC16M024776 LINC01567 TNRC6A
GH16J024662 Enhancer 0.9 Ensembl ENCODE 0.4 +8.2 8161 1.4 SP1 RELA CREM ZBED1 IKZF1 IKZF2 ZSCAN29 DPF2 EED RUNX3 LINC01567 TNRC6A
GH16J024645 Enhancer 1 Ensembl ENCODE 0.3 +24.5 24461 2.4 MAFK POLR2A NFE2L2 REST ZNF316 CEBPB CHD2 JUN SP1 RCOR1 LINC01567 TNRC6A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01567 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01567 Gene

Genomic Locations for LINC01567 Gene
chr16:24,661,422-24,671,062
(GRCh38/hg38)
Size:
9,641 bases
Orientation:
Minus strand
chr16:24,672,743-24,682,383
(GRCh37/hg19)
Size:
9,641 bases
Orientation:
Minus strand

Genomic View for LINC01567 Gene

Genes around LINC01567 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01567 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01567 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01567 Gene

Proteins for LINC01567 Gene

Post-translational modifications for LINC01567 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01567 Gene

Domains & Families for LINC01567 Gene

Gene Families for LINC01567 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01567: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01567 Gene

Function for LINC01567 Gene

Phenotypes From GWAS Catalog for LINC01567 Gene

Phenotypes for LINC01567 Gene

GenomeRNAi human phenotypes for LINC01567:
genes like me logo Genes that share phenotypes with LINC01567: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01567 Gene

Localization for LINC01567 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01567 Gene

Pathways & Interactions for LINC01567 Gene

PathCards logo

SuperPathways for LINC01567 Gene

No Data Available

Interacting Proteins for LINC01567 Gene

Gene Ontology (GO) - Biological Process for LINC01567 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01567 Gene

Drugs & Compounds for LINC01567 Gene

No Compound Related Data Available

Transcripts for LINC01567 Gene

mRNA/cDNA for LINC01567 Gene

(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01567 Gene

No ASD Table

Relevant External Links for LINC01567 Gene

GeneLoc Exon Structure for
LINC01567
ECgene alternative splicing isoforms for
LINC01567

Expression for LINC01567 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01567 Gene:

LINC01567
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01567 Gene

Orthologs for LINC01567 Gene

Evolution for LINC01567 Gene

ENSEMBL:
Gene Tree for LINC01567 (if available)
TreeFam:
Gene Tree for LINC01567 (if available)

No data available for Orthologs for LINC01567 Gene

Paralogs for LINC01567 Gene

No data available for Paralogs for LINC01567 Gene

Variants for LINC01567 Gene

Sequence variations from dbSNP and Humsavar for LINC01567 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000344974 -- 24,665,904(-) T/C/G intron_variant
rs1000392034 -- 24,665,566(-) T/C intron_variant
rs1000800836 -- 24,661,244(-) C/T downstream_transcript_variant
rs1000955337 -- 24,667,690(-) G/C intron_variant
rs1001017658 -- 24,671,288(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01567 Gene

Variant ID Type Subtype PubMed ID
esv3638256 CNV loss 21293372

Additional Variant Information for LINC01567 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01567

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01567 Gene

Disorders for LINC01567 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01567 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01567

genes like me logo Genes that share disorders with LINC01567: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01567 Gene

Publications for LINC01567 Gene

  1. Long intergenic non-protein-coding RNA 1567 (LINC01567) acts as a "sponge" against microRNA-93 in regulating the proliferation and tumorigenesis of human colon cancer stem cells. (PMID: 29110645) Yu X … Zou J (BMC cancer 2017) 2 3 58
  2. Genome-wide association study of the rate of cognitive decline in Alzheimer's disease. (PMID: 23535033) Sherva R … Alzheimer's Disease Genetics Consortium (Alzheimer's & dementia : the journal of the Alzheimer's Association 2014) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01567 Gene

Sources for LINC01567 Gene

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