Aliases for LINC01566 Gene

Data sources for LINC01566 Gene:

RNA type for LINC01566 Gene

lncRNA

Aliases for LINC01566 Gene

External Ids for LINC01566 Gene

Previous GeneCards Identifiers for LINC01566 Gene

  • GC16P035363
  • GC16P035860

Summaries for LINC01566 Gene

GeneCards Summary for LINC01566 Gene

LINC01566 (Long Intergenic Non-Protein Coding RNA 1566) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01566 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01566 Gene

Genomics for LINC01566 Gene

Genomic Locations for LINC01566 Gene

Latest Assembly
chr16:35,356,390-35,392,186
(GRCh38/hg38)
Size:
35,797 bases
Orientation:
Plus strand

Previous Assembly
chr16:34,597,787-34,626,084
(GRCh37/hg19 by Entrez Gene)
Size:
28,298 bases
Orientation:
Plus strand

chr16:34,597,783-34,624,955
(GRCh37/hg19 by Ensembl)
Size:
27,173 bases
Orientation:
Plus strand

Genomic View for LINC01566 Gene

Genes around LINC01566 on UCSC Golden Path with GeneCards custom track
LINC01566 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01566 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01566 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01566 Gene

No data available for GeneHancer (GH) Regulatory Elements for LINC01566 Gene

Proteins for LINC01566 Gene

Post-translational modifications for LINC01566 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01566 Gene

Domains & Families for LINC01566 Gene

Gene Families for LINC01566 Gene

genes like me logo Genes that share domains with LINC01566: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01566 Gene

Function for LINC01566 Gene

Phenotypes From GWAS Catalog for LINC01566 Gene

Phenotypes for LINC01566 Gene

genes like me logo Genes that share phenotypes with LINC01566: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01566 Gene

Localization for LINC01566 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01566 Gene

Pathways & Interactions for LINC01566 Gene

PathCards logo

SuperPathways for LINC01566 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01566 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01566 Gene

Drugs & Compounds for LINC01566 Gene

No Compound Related Data Available

Transcripts for LINC01566 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01566 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005C1A8B_9606 lncRNA 2801 4

Ensembl: ENST00000569242 (view in UCSC) ,

LncBook: HSALNT0230284,

LNCipedia: LINC01566:3,

NONCODE: NONHSAT142184.2,

URS000075DB35_9606 lncRNA 1371 3

RefSeq: NR_027080,

LNCipedia: LINC01566:2,

NONCODE: NONHSAT142183.2,

URS0000136640_9606 lncRNA 665 3

Ensembl: ENST00000561756 (view in UCSC) ,

LncBook: HSALNT0230282, HSALNT0230283,

LNCipedia: LINC01566:1,

URS000075B08B_9606 lncRNA 2801 1

RefSeq: NR_027079,

URS00009B7B6E_9606 lncRNA 494 2

LncBook: HSALNT0230288,

NONCODE: NONHSAT172926.1,

LINC01566 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01566 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01566 Gene

No ASD Table

Relevant External Links for LINC01566 Gene

GeneLoc Exon Structure for
LINC01566

Expression for LINC01566 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01566 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01566

genes like me logo Genes that share expression patterns with LINC01566: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01566 Gene

Orthologs for LINC01566 Gene

Evolution for LINC01566 Gene

ENSEMBL:
Gene Tree for LINC01566 (if available)
TreeFam:
Gene Tree for LINC01566 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01566

No data available for Orthologs for LINC01566 Gene

Paralogs for LINC01566 Gene

No data available for Paralogs for LINC01566 Gene

Variants for LINC01566 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01566 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01566 Gene

Variant ID Type Subtype PubMed ID
dgv117e55 CNV gain 17911159
dgv118e55 CNV gain 17911159
dgv119e55 CNV gain 17911159
dgv165n21 CNV gain 19592680
dgv22n64 CNV gain 17921354
dgv2960n100 CNV gain 25217958
dgv2962n100 CNV gain 25217958
dgv2963n100 CNV gain 25217958
dgv2964n100 CNV gain 25217958
dgv2965n100 CNV gain 25217958
dgv2966n100 CNV gain 25217958
dgv2967n100 CNV gain 25217958
dgv2968n100 CNV gain 25217958
dgv2969n100 CNV gain 25217958
dgv2970n100 CNV gain 25217958
dgv2971n100 CNV gain 25217958
dgv2972n100 CNV gain 25217958
dgv4n1 CNV deletion 15895083
dgv5084n54 CNV gain 21841781
dgv5085n54 CNV gain 21841781
dgv51e203 CNV gain 21179565
dgv824e212 CNV gain 25503493
dgv825e212 CNV gain 25503493
esv22460 CNV gain+loss 19812545
esv2421698 CNV duplication 20811451
esv2751556 CNV gain 17911159
esv2751557 CNV gain 17911159
esv33073 CNV loss 17666407
esv3331374 CNV duplication 20981092
esv3345136 CNV duplication 20981092
esv3369020 CNV duplication 20981092
esv3385037 CNV duplication 20981092
esv3410645 OTHER inversion 20981092
esv3428378 CNV duplication 20981092
esv3638499 CNV loss 21293372
esv3638500 CNV gain 21293372
esv995712 CNV loss 20482838
nsv1056617 CNV gain 25217958
nsv1056658 CNV gain 25217958
nsv1056777 CNV gain 25217958
nsv1061347 CNV gain 25217958
nsv1062933 CNV gain 25217958
nsv1125370 OTHER inversion 24896259
nsv428326 CNV loss 18775914
nsv442722 CNV gain 18776908
nsv471088 CNV gain 18288195
nsv499817 OTHER inversion 21111241
nsv514804 CNV gain 21397061
nsv516385 CNV gain 19592680
nsv527583 CNV gain 19592680
nsv572385 CNV gain 21841781
nsv7283 OTHER inversion 18451855
nsv819792 CNV loss 19587683
nsv820561 CNV duplication 20802225
nsv833212 CNV gain 17160897
nsv833213 CNV gain 17160897
nsv9441 CNV loss 18304495
nsv978144 CNV duplication 23825009

Additional Variant Information for LINC01566 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01566
Leiden Open Variation Database (LOVD)
LINC01566

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01566 Gene

Disorders for LINC01566 Gene

Additional Disease Information for LINC01566

No disorders were found for LINC01566 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01566 Gene

Publications for LINC01566 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01566 Gene

Products for LINC01566 Gene

Sources for LINC01566 Gene