Aliases for LINC01562 Gene

Subcategory (RNA class) for LINC01562 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01562 Gene

  • Long Intergenic Non-Protein Coding RNA 1562 2 3 5
  • LINC01562 2 170
  • RP11-296A18.3 3
  • HSALNG0003560 169
  • NONHSAG001443 94

External Ids for LINC01562 Gene

Summaries for LINC01562 Gene

GeneCards Summary for LINC01562 Gene

LINC01562 (Long Intergenic Non-Protein Coding RNA 1562) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01562 include Degenerative Disc Disease.

Additional gene information for LINC01562 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01562 Gene

Genomics for LINC01562 Gene

GeneHancer (GH) Regulatory Elements for LINC01562 Gene

Promoters and enhancers for LINC01562 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01562 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01562 Gene

Genomic Locations for LINC01562 Gene
chr1:51,192,518-51,236,237
(GRCh38/hg38)
Size:
43,720 bases
Orientation:
Minus strand
chr1:51,660,767-51,700,768
(GRCh37/hg19)
Size:
40,002 bases
Orientation:
Minus strand

Genomic View for LINC01562 Gene

Genes around LINC01562 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01562 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01562 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01562 Gene

Proteins for LINC01562 Gene

Post-translational modifications for LINC01562 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01562 Gene

Domains & Families for LINC01562 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01562 Gene

Function for LINC01562 Gene

Phenotypes From GWAS Catalog for LINC01562 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01562 Gene

Localization for LINC01562 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01562 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01562 Gene

Pathways & Interactions for LINC01562 Gene

PathCards logo

SuperPathways for LINC01562 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01562 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01562 Gene

Drugs & Compounds for LINC01562 Gene

No Compound Related Data Available

Transcripts for LINC01562 Gene

mRNA/cDNA for LINC01562 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(1) NONCODE transcripts :
(4) LNCipedia transcripts :
(2) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01562 Gene

No ASD Table

Relevant External Links for LINC01562 Gene

GeneLoc Exon Structure for
LINC01562
ECgene alternative splicing isoforms for
LINC01562

Expression for LINC01562 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01562 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01562 Gene:

LINC01562
genes like me logo Genes that share expression patterns with LINC01562: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01562 Gene

Orthologs for LINC01562 Gene

Evolution for LINC01562 Gene

ENSEMBL:
Gene Tree for LINC01562 (if available)
TreeFam:
Gene Tree for LINC01562 (if available)

No data available for Orthologs for LINC01562 Gene

Paralogs for LINC01562 Gene

No data available for Paralogs for LINC01562 Gene

Variants for LINC01562 Gene

Sequence variations from dbSNP and Humsavar for LINC01562 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000019203 -- 51,223,890(-) A/G intron_variant
rs1000019386 -- 51,206,622(-) T/A intron_variant
rs1000115779 -- 51,210,344(-) CACCACCAC/CACCAC intron_variant
rs1000194802 -- 51,228,123(-) A/T intron_variant
rs1000224992 -- 51,210,886(-) C/T intron_variant

Additional Variant Information for LINC01562 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01562

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01562 Gene

Disorders for LINC01562 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01562 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
degenerative disc disease
  • lumbar disc degeneration
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01562

genes like me logo Genes that share disorders with LINC01562: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01562 Gene

Publications for LINC01562 Gene

  1. Aberrantly expressed long noncoding RNAs in human intervertebral disc degeneration: a microarray related study. (PMID: 25280944) Wan ZY … Luo ZJ (Arthritis research & therapy 2014) 2 3 56

Products for LINC01562 Gene

Sources for LINC01562 Gene