Aliases for LINC01561 Gene

Subcategory (RNA class) for LINC01561 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC01561 Gene

  • Long Intergenic Non-Protein Coding RNA 1561 2 3 5
  • LINC01561 2 168
  • C10orf85 3 4
  • Uncharacterized Protein Encoded By LINC01561 4
  • Chromosome 10 Open Reading Frame 85 2
  • HSALNG0081106 167

External Ids for LINC01561 Gene

Previous HGNC Symbols for LINC01561 Gene

  • C10orf85

Summaries for LINC01561 Gene

GeneCards Summary for LINC01561 Gene

LINC01561 (Long Intergenic Non-Protein Coding RNA 1561) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01561 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01561 Gene

Genomics for LINC01561 Gene

GeneHancer (GH) Regulatory Elements for LINC01561 Gene

Promoters and enhancers for LINC01561 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J120599 Enhancer 0.5 Ensembl 500.7 +1.1 1051 0.8 HDAC2 CTCF POLR2A RAD21 SMARCA4 EZH2 PAX5 KDM1A LINC01561 ENSG00000274461
GH10J120600 Enhancer 0.3 Ensembl 500.7 +1.8 1752 0.2 HDAC2 KDM1A LINC01561 ENSG00000274461
GH10J120503 Enhancer 0.9 Ensembl ENCODE 14.8 -91.3 -91340 6 EP300 JUND ZIC2 REST POLR2A CREB1 GATA3 FOS SRF ZNF513 LINC01561 PLPP4 piR-32909
GH10J120641 Enhancer 0.7 Ensembl ENCODE 11 +45.9 45852 6.8 GATA3 FOS CTCF RCOR1 GATA2 RAD21 JUN CHD2 POLR2A LINC01561 ENSG00000274461 lnc-FGFR2-10
GH10J120555 Enhancer 0.6 Ensembl ENCODE 10.7 -41.3 -41348 2.4 USF1 ZIC2 TCF12 ZBTB40 NANOG PRDM10 PLPP4 LINC01561 piR-32909
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01561 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01561 Gene

Genomic Locations for LINC01561 Gene
chr10:120,597,949-120,600,124
(GRCh38/hg38)
Size:
2,176 bases
Orientation:
Plus strand
chr10:122,357,721-122,359,635
(GRCh37/hg19)
Size:
1,915 bases
Orientation:
Plus strand

Genomic View for LINC01561 Gene

Genes around LINC01561 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01561 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01561 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01561 Gene

Proteins for LINC01561 Gene

  • Protein details for LINC01561 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1V8-CJ085_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01561
    Protein Accession:
    Q8N1V8

    Protein attributes for LINC01561 Gene

    Size:
    128 amino acids
    Molecular mass:
    13299 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01561 Gene

Post-translational modifications for LINC01561 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01561 Gene

Domains & Families for LINC01561 Gene

Gene Families for LINC01561 Gene

Protein Domains for LINC01561 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01561: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01561 Gene

Function for LINC01561 Gene

Phenotypes From GWAS Catalog for LINC01561 Gene

genes like me logo Genes that share phenotypes with LINC01561: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01561

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01561 Gene

Localization for LINC01561 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01561 gene
Compartment Confidence
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01561 Gene

Pathways & Interactions for LINC01561 Gene

PathCards logo

SuperPathways for LINC01561 Gene

No Data Available

Interacting Proteins for LINC01561 Gene

Selected Interacting proteins: Q8N1V8-CJ085_HUMAN for LINC01561 Gene via IID

Symbol External ID(s) Details
GATB
;

Gene Ontology (GO) - Biological Process for LINC01561 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01561 Gene

Drugs & Compounds for LINC01561 Gene

No Compound Related Data Available

Transcripts for LINC01561 Gene

mRNA/cDNA for LINC01561 Gene

4 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LncBook transcripts :
3 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01561

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01561 Gene

No ASD Table

Relevant External Links for LINC01561 Gene

GeneLoc Exon Structure for
LINC01561

Expression for LINC01561 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01561 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01561

genes like me logo Genes that share expression patterns with LINC01561: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01561 Gene

Orthologs for LINC01561 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01561 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10orf85 31
  • 98 (a)
OneToOne
Species where no ortholog for LINC01561 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01561 Gene

ENSEMBL:
Gene Tree for LINC01561 (if available)
TreeFam:
Gene Tree for LINC01561 (if available)

Paralogs for LINC01561 Gene

No data available for Paralogs for LINC01561 Gene

Variants for LINC01561 Gene

Additional dbSNP identifiers (rs#s) for LINC01561 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01561 Gene

Variant ID Type Subtype PubMed ID
esv2760128 CNV gain 21179565
esv3624731 CNV gain 21293372
nsv1052357 CNV gain 25217958
nsv528787 CNV gain 19592680

Variation tolerance for LINC01561 Gene

Gene Damage Index Score: 0.80; 16.91% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01561 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01561

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01561 Gene

Disorders for LINC01561 Gene

Additional Disease Information for LINC01561

No disorders were found for LINC01561 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01561 Gene

Publications for LINC01561 Gene

  1. Mixomics analysis of breast cancer: Long non-coding RNA linc01561 acts as ceRNA involved in the progression of breast cancer. (PMID: 29890225) Jiang R … Shi P (The international journal of biochemistry & cell biology 2018) 2 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 54
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 54
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 54
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 54

Products for LINC01561 Gene

Sources for LINC01561 Gene