Aliases for LINC01559 Gene

Subcategory (RNA class) for LINC01559 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01559 Gene

  • Long Intergenic Non-Protein Coding RNA 1559 2 3 5
  • LINC01559 2 168
  • C12orf36 3 4
  • Putative Uncharacterized Protein Encoded By LINC01559 4
  • Chromosome 12 Open Reading Frame 36 2
  • NONHSAG010553 92
  • HSALNG0089456 167

External Ids for LINC01559 Gene

Previous HGNC Symbols for LINC01559 Gene

  • C12orf36

Summaries for LINC01559 Gene

GeneCards Summary for LINC01559 Gene

LINC01559 (Long Intergenic Non-Protein Coding RNA 1559) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01559 include Autosomal Dominant Non-Syndromic Intellectual Disability 6.

Additional gene information for LINC01559 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01559 Gene

Genomics for LINC01559 Gene

GeneHancer (GH) Regulatory Elements for LINC01559 Gene

Promoters and enhancers for LINC01559 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J013385 Enhancer 0.5 Ensembl dbSUPER 515.3 +0.4 366 0.4 EP300 KLF1 LINC01559 piR-50152-002
GH12J013388 Enhancer 0.3 dbSUPER 500.7 -1.9 -1934 0.4 NRF1 ZNF610 LINC01559 piR-48209-124
GH12J013390 Enhancer 1.1 Ensembl ENCODE dbSUPER 20.2 -3.4 -3434 1.6 TCF12 ZNF10 RFX1 FOXA2 ZBTB17 FOS POLR2A FOSL2 CEBPB ZBTB33 piR-48209-124 LINC01559
GH12J013347 Enhancer 0.8 Ensembl ENCODE 18.2 +39.6 39622 1.5 CTCF FOS FOSL2 ATF3 FOSL1 NR3C1 EZH2 ZFHX2 ZNF335 JUND LINC01559 piR-52079-041 ENSG00000286869
GH12J013382 Enhancer 0.9 Ensembl ENCODE dbSUPER 15.7 +3.7 3719 1.1 ATF2 FOS JUND ZNF335 KLF17 KLF1 ZBTB21 ATF7 SETDB1 ATF3 LINC01559 piR-50152-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01559 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01559 Gene

Genomic Locations for LINC01559 Gene
chr12:13,370,670-13,387,167
(GRCh38/hg38)
Size:
16,498 bases
Orientation:
Minus strand
chr12:13,523,605-13,540,101
(GRCh37/hg19)
Size:
16,497 bases
Orientation:
Minus strand

Genomic View for LINC01559 Gene

Genes around LINC01559 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01559 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01559 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01559 Gene

Proteins for LINC01559 Gene

  • Protein details for LINC01559 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q495D7-CL036_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01559
    Protein Accession:
    Q495D7
    Secondary Accessions:
    • Q8N280

    Protein attributes for LINC01559 Gene

    Size:
    138 amino acids
    Molecular mass:
    15996 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01559 Gene

Post-translational modifications for LINC01559 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01559 Gene

Domains & Families for LINC01559 Gene

Protein Domains for LINC01559 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01559: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01559 Gene

Function for LINC01559 Gene

Phenotypes From GWAS Catalog for LINC01559 Gene

Phenotypes for LINC01559 Gene

genes like me logo Genes that share phenotypes with LINC01559: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01559

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01559 Gene

Localization for LINC01559 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01559 Gene

Pathways & Interactions for LINC01559 Gene

PathCards logo

SuperPathways for LINC01559 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01559 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01559 Gene

Drugs & Compounds for LINC01559 Gene

No Compound Related Data Available

Transcripts for LINC01559 Gene

mRNA/cDNA for LINC01559 Gene

7 RNACentral transcripts :
2 REFSEQ mRNAs :
7 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
6 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01559

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01559 Gene

No ASD Table

Relevant External Links for LINC01559 Gene

GeneLoc Exon Structure for
LINC01559

Expression for LINC01559 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01559 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01559

genes like me logo Genes that share expression patterns with LINC01559: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01559 Gene

Orthologs for LINC01559 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01559 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C12orf36 31
  • 99 (a)
OneToOne
Species where no ortholog for LINC01559 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01559 Gene

ENSEMBL:
Gene Tree for LINC01559 (if available)
TreeFam:
Gene Tree for LINC01559 (if available)

Paralogs for LINC01559 Gene

No data available for Paralogs for LINC01559 Gene

Variants for LINC01559 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01559 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
rs11055389 - p.Pro38Leu
rs17821405 - p.Ala76Glu
rs7308685 - p.Ile84Val

Additional dbSNP identifiers (rs#s) for LINC01559 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01559 Gene

Variant ID Type Subtype PubMed ID
nsv508666 CNV deletion 20534489

Variation tolerance for LINC01559 Gene

Gene Damage Index Score: 2.13; 38.76% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01559 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01559

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01559 Gene

Disorders for LINC01559 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01559 Gene - From: DISEASES

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01559

genes like me logo Genes that share disorders with LINC01559: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01559 Gene

Publications for LINC01559 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

Products for LINC01559 Gene

Sources for LINC01559 Gene