LINC01556 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1556

GC06P028943
GIFtS:
17
See more...

Aliases for LINC01556 Gene

Subcategory (RNA class) for LINC01556 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01556 Gene

  • Long Intergenic Non-Protein Coding RNA 1556 2 3 5
  • LINC01556 2 5 165
  • C6orf100 3 4
  • DJ25J6.5 2 3
  • Putative Uncharacterized Protein Encoded By LINC01556 4
  • Chromosome 6 Open Reading Frame 100 2
  • NONHSAG046531.2 91
  • NONHSAG043336.2 91
  • NONHSAG046011.2 91
  • NONHSAG046176.2 91
  • NONHSAG046344.2 91
  • NONHSAG045633.2 91
  • HSALNG0049022 164

External Ids for LINC01556 Gene

Previous HGNC Symbols for LINC01556 Gene

  • C6orf100

Summaries for LINC01556 Gene

GeneCards Summary for LINC01556 Gene

LINC01556 (Long Intergenic Non-Protein Coding RNA 1556) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01556 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01556 Gene

Genomics for LINC01556 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01556 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01556 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01556 Gene

Genomic Locations for LINC01556 Gene
chr6:28,943,784-28,944,538
(GRCh38/hg38)
Size:
755 bases
Orientation:
Plus strand
chr6:28,911,654-28,912,314
(GRCh37/hg19)
Size:
661 bases
Orientation:
Plus strand

Genomic View for LINC01556 Gene

Genes around LINC01556 on UCSC Golden Path with GeneCards custom track
LINC01556 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01556 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01556 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01556 Gene

Proteins for LINC01556 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for LINC01556 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JQF7-CF100_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01556
    Protein Accession:
    Q5JQF7
    Secondary Accessions:
    • B0S7Y3
    • B0V298
    • Q5SNN6
    • Q96KW1

    Protein attributes for LINC01556 Gene

    Size:
    62 amino acids
    Molecular mass:
    7289 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAC69878.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for LINC01556 Gene

Post-translational modifications for LINC01556 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01556 Gene

Domains & Families for LINC01556 Gene

Gene Families for LINC01556 Gene

HGNC:

Protein Domains for LINC01556 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01556: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01556 Gene

Function for LINC01556 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01556 Gene

genes like me logo Genes that share phenotypes with LINC01556: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC01556 Gene

Localization for LINC01556 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01556 Gene

Pathways & Interactions for LINC01556 Gene

PathCards logo

SuperPathways for LINC01556 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01556 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01556 Gene

Drugs & Compounds for LINC01556 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC01556 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01556 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007C02B6_9606 lncRNA 466 4

Ensembl: ENST00000377186 (view in UCSC) ,

LncBook: HSALNT0103406,

LNCipedia: LINC01556:2,

NONCODE: NONHSAT207035.1,

URS000075BE0B_9606 lncRNA 755 2

HGNC: 21195,

RefSeq: NR_103538,

URS00008BF077_9606 lncRNA 755 2

LNCipedia: LINC01556:1,

NONCODE: NONHSAT108497.2, NONHSAT117211.2, NONHSAT117870.2,

URS00009C045F_9606 lncRNA 755 1

NONCODE: NONHSAT116508.2,

URS00009C5517_9606 lncRNA 755 1

NONCODE: NONHSAT117560.2, NONHSAT118228.2,

LINC01556 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01556 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01556 Gene

No ASD Table

Relevant External Links for LINC01556 Gene

GeneLoc Exon Structure for
LINC01556

Expression for LINC01556 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01556 Gene

mRNA expression in normal human tissues for LINC01556 Gene
mRNA expression by GTEx for LINC01556 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01556

genes like me logo Genes that share expression patterns with LINC01556: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01556 Gene

Orthologs for LINC01556 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01556 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia C6orf100 31
  • 95 (a)
 OneToOne
Species where no ortholog for LINC01556 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC01556 Gene

ENSEMBL:
Gene Tree for LINC01556 (if available)
TreeFam:
Gene Tree for LINC01556 (if available)

Paralogs for LINC01556 Gene

No data available for Paralogs for LINC01556 Gene

Variants for LINC01556 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01556 Gene

SNP ID Clinical significance and condition Chr 06 pos Variation AA Info Type
rs2071790 - p.Gly41Glu

Additional dbSNP identifiers (rs#s) for LINC01556 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01556 Gene

Variant ID Type Subtype PubMed ID
nsv1074388 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259
nsv830622 CNV gain 17160897

Variation tolerance for LINC01556 Gene

Gene Damage Index Score: 0.27; 6.05% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01556 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01556

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01556 Gene

Disorders for LINC01556 Gene

Additional Disease Information for LINC01556

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01556 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01556 Gene

Publications for LINC01556 Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 4

ExternalLinks

View latest publications for LINC01556 gene in Mastermind

Products for LINC01556 Gene

Sources for LINC01556 Gene