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Aliases for LINC01556 Gene

Subcategory (RNA class) for LINC01556 Gene


Quality Score for this RNA gene is


Aliases for LINC01556 Gene

  • Long Intergenic Non-Protein Coding RNA 1556 2 3 5
  • C6orf100 3 4
  • Chromosome 6 Open Reading Frame 100 2
  • DJ25J6.5 3

External Ids for LINC01556 Gene

ORGUL Members for LINC01556 Gene

Previous HGNC Symbols for LINC01556 Gene

  • C6orf100

Summaries for LINC01556 Gene

GeneCards Summary for LINC01556 Gene

LINC01556 (Long Intergenic Non-Protein Coding RNA 1556) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01556 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01556 Gene

Genomics for LINC01556 Gene

GeneHancer (GH) Regulatory Elements for LINC01556 Gene

Promoters and enhancers for LINC01556 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I028942 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 550.8 +0.3 334 2.3 MLX ZFP64 FEZF1 DMAP1 IRF4 ZNF213 E2F8 ZNF143 SP3 NFYC GC06P028946 LINC01556 TRL-AAG2-2 TRM-CAT3-1 ZSCAN23 ZSCAN12 TRIM27 ZSCAN26 ZKSCAN8 PGBD1
GH06I028838 Promoter/Enhancer 1.6 Ensembl ENCODE 16.4 -105.3 -105284 2.6 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC GLIS1 RCOR2 NBN ENSG00000225173 GC06M028898 TRA-AGC2-1 TRIM27 ZKSCAN4 ZSCAN12 ZKSCAN3 ZSCAN23 ZKSCAN8 SUMO2P1
GH06I028880 Enhancer 1.5 Ensembl ENCODE dbSUPER 11.4 -62.5 -62517 1.3 HDGF PKNOX1 ARNT ZFP64 ARID4B DMAP1 ZNF2 SLC30A9 CBX5 ZNF213 GC06P028888 PIR48340 TRR-CCG1-2 ZSCAN12 ZKSCAN8 TRIM27 ZKSCAN3 HLA-F-AS1 MICE ZSCAN9
GH06I028921 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 6 -20.4 -20370 4.1 HDGF PKNOX1 SMAD1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 TRIM27 ZSCAN26 ZSCAN12 PGBD1 ZSCAN23 ZFP57 ZKSCAN3 ZKSCAN4 ZSCAN9 ZSCAN31
GH06I028939 Enhancer 1.5 Ensembl ENCODE dbSUPER 7.7 -2.8 -2750 3.1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 SP3 SSRP1 ZNF610 GC06P028942 TRL-CAA1-2 TRQ-CTG1-3 ZSCAN23 ZSCAN12 ZKSCAN8 ZSCAN26 PGBD1 TRIM27 ZKSCAN3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01556 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01556 Gene

Genomic Locations for LINC01556 Gene
755 bases
Plus strand

Genomic View for LINC01556 Gene

Genes around LINC01556 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01556 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01556 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LINC01556 Gene

  • Protein details for LINC01556 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by LINC01556
    Protein Accession:
    Secondary Accessions:
    • B0S7Y3
    • B0V298
    • Q5SNN6
    • Q96KW1

    Protein attributes for LINC01556 Gene

    62 amino acids
    Molecular mass:
    7289 Da
    Quaternary structure:
    No Data Available
    • Sequence=CAC69878.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for LINC01556 Gene

Post-translational modifications for LINC01556 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01556 Gene

Domains & Families for LINC01556 Gene

Protein Domains for LINC01556 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01556: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01556 Gene

Function for LINC01556 Gene

Phenotypes From GWAS Catalog for LINC01556 Gene

Phenotypes for LINC01556 Gene

genes like me logo Genes that share phenotypes with LINC01556: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC01556 Gene

Localization for LINC01556 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01556 gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 2
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01556 Gene

Pathways & Interactions for LINC01556 Gene

SuperPathways for LINC01556 Gene

No Data Available

Interacting Proteins for LINC01556 Gene

Gene Ontology (GO) - Biological Process for LINC01556 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01556 Gene

Drugs & Compounds for LINC01556 Gene

No Compound Related Data Available

Transcripts for LINC01556 Gene

mRNA/cDNA for LINC01556 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01556 Gene

No ASD Table

Relevant External Links for LINC01556 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01556 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01556 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01556 Gene:

genes like me logo Genes that share expression patterns with LINC01556: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01556 Gene

Orthologs for LINC01556 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01556 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C6orf100 34
  • 95 (a)
Species where no ortholog for LINC01556 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01556 Gene

Gene Tree for LINC01556 (if available)
Gene Tree for LINC01556 (if available)

Paralogs for LINC01556 Gene

No data available for Paralogs for LINC01556 Gene

Variants for LINC01556 Gene

Sequence variations from dbSNP and Humsavar for LINC01556 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000421973 -- 28,942,870(+) G/C upstream_transcript_variant
rs1001684491 -- 28,943,797(+) T/C non_coding_transcript_variant
rs1002164807 -- 28,944,117(+) C/T non_coding_transcript_variant
rs1004109645 -- 28,944,600(+) G/A downstream_transcript_variant
rs1004222726 -- 28,944,646(+) C/A/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01556 Gene

Variant ID Type Subtype PubMed ID
nsv830622 CNV gain 17160897
nsv1145096 CNV deletion 24896259
nsv1122126 CNV deletion 24896259
nsv1074388 CNV deletion 25765185

Variation tolerance for LINC01556 Gene

Gene Damage Index Score: 0.27; 6.05% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01556 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01556 Gene

Disorders for LINC01556 Gene

Additional Disease Information for LINC01556

No disorders were found for LINC01556 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01556 Gene

Publications for LINC01556 Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 58
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 4 58

Products for LINC01556 Gene

Sources for LINC01556 Gene

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