Aliases for LINC01555 Gene

Subcategory (RNA class) for LINC01555 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC01555 Gene

  • Long Intergenic Non-Protein Coding RNA 1555 2 3 5
  • LINC01555 2 5 165
  • C1orf180 3 4
  • Putative Uncharacterized Protein Encoded By LINC01555 4
  • Chromosome 1 Open Reading Frame 180 2
  • HSALNG0004819 164
  • FLJ35487 2

External Ids for LINC01555 Gene

Previous HGNC Symbols for LINC01555 Gene

  • C1orf180

Summaries for LINC01555 Gene

GeneCards Summary for LINC01555 Gene

LINC01555 (Long Intergenic Non-Protein Coding RNA 1555) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01555 include Rectum Adenocarcinoma.

Additional gene information for LINC01555 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01555 Gene

Genomics for LINC01555 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01555 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J084630 Enhancer 1.2 Ensembl ENCODE dbSUPER 600.7 +1.5 1523 5.9 CREB1 ZNF629 IKZF1 ZNF692 TARDBP JUND PKNOX1 PATZ1 DPF2 ZNF600 LINC01555 SPATA1 GNG5 RPF1 CTBS ENSG00000232622 LOC107985104 lnc-SSX2IP-3 LINC01461 SSX2IP
GH01J084686 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.6 -55.2 -55206 7.2 SP1 CTCF PRDM10 ZNF629 RFX1 LEF1 IKZF1 ZNF692 POLR2A BACH1 SSX2IP lnc-SPATA1-3 ENSG00000271576 LINC01555 CTBS lnc-CTBS-6
GH01J084697 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.6 -64.2 -64181 4.4 ZNF629 IKZF1 ZNF692 JUND PRDM1 ZSCAN4 PKNOX1 ZNF600 ZNF341 SCRT2 LPAR3 RPF1 SSX2IP LINC01555 CTBS RF00994-033 HSALNG0004825
GH01J084711 Enhancer 0.8 Ensembl ENCODE dbSUPER 5.8 -77.1 -77084 2.1 IKZF1 FOS FOSL1 PRDM10 ZBTB33 LPAR3 LINC01555 CTBS HSALNG0004825 RF00994-033 SSX2IP
GH01J084704 Enhancer 0.7 Ensembl dbSUPER 5.6 -70.3 -70281 1.4 PRDM1 IKZF2 SP1 RELB RUNX3 MCM5 YY1 IKZF1 NR2F1 SPI1 BCL10 LPAR3 RPF1 LINC01555 RF00994-033 HSALNG0004825 SSX2IP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01555 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01555 Gene

Genomic Locations for LINC01555 Gene
chr1:84,628,230-84,635,020
(GRCh38/hg38)
Size:
6,791 bases
Orientation:
Minus strand
chr1:85,093,913-85,100,703
(GRCh37/hg19)
Size:
6,791 bases
Orientation:
Minus strand

Genomic View for LINC01555 Gene

Genes around LINC01555 on UCSC Golden Path with GeneCards custom track
LINC01555 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01555 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01555 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01555 Gene

Proteins for LINC01555 Gene

  • Protein details for LINC01555 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NAE3-CA180_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01555
    Protein Accession:
    Q8NAE3

    Protein attributes for LINC01555 Gene

    Size:
    123 amino acids
    Molecular mass:
    13125 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01555 Gene

Post-translational modifications for LINC01555 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01555 Gene

Domains & Families for LINC01555 Gene

Gene Families for LINC01555 Gene

Protein Domains for LINC01555 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01555: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01555 Gene

Function for LINC01555 Gene

Phenotypes for LINC01555 Gene

GenomeRNAi human phenotypes for LINC01555:
genes like me logo Genes that share phenotypes with LINC01555: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01555

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01555 Gene

Localization for LINC01555 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01555 Gene

Pathways & Interactions for LINC01555 Gene

PathCards logo

SuperPathways for LINC01555 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01555 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01555 Gene

Drugs & Compounds for LINC01555 Gene

No Compound Related Data Available

Transcripts for LINC01555 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01555 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D079_9606 lncRNA 2884 5

HGNC: 26647,

RefSeq: NR_027379,

Ensembl: ENST00000370624 (view in UCSC) ,

LncBook: HSALNT0009756,

LNCipedia: LINC01555:1,

LINC01555 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01555 Gene

1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01555

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01555 Gene

No ASD Table

Relevant External Links for LINC01555 Gene

GeneLoc Exon Structure for
LINC01555

Expression for LINC01555 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01555 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01555

genes like me logo Genes that share expression patterns with LINC01555: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01555 Gene

Orthologs for LINC01555 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01555 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C1orf180 31
  • 98 (a)
OneToOne
Species where no ortholog for LINC01555 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC01555 Gene

ENSEMBL:
Gene Tree for LINC01555 (if available)
TreeFam:
Gene Tree for LINC01555 (if available)

Paralogs for LINC01555 Gene

No data available for Paralogs for LINC01555 Gene

Variants for LINC01555 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01555 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
rs4551616 - p.Phe96Val

Additional dbSNP identifiers (rs#s) for LINC01555 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01555 Gene

Variant ID Type Subtype PubMed ID
dgv60e212 CNV loss 25503493
esv3893779 CNV gain 25118596
nsv1000325 CNV gain 25217958

Variation tolerance for LINC01555 Gene

Gene Damage Index Score: 0.47; 10.17% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01555 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01555

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01555 Gene

Disorders for LINC01555 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01555 Gene - From: DISEASES

Disorder Aliases PubMed IDs
rectum adenocarcinoma
  • rectal adenocarcinoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01555: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01555 Gene

Publications for LINC01555 Gene

  1. The Long Noncoding RNA, LINC01555, Promotes Invasion and Metastasis of Colorectal Cancer by Activating the Neuropeptide, Neuromedin U. (PMID: 31144675) Wang X … Li Y (Medical science monitor : international medical journal of experimental and clinical research 2019) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01555 Gene

Sources for LINC01555 Gene