Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01555 Gene

Subcategory (RNA class) for LINC01555 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01555 Gene

  • Long Intergenic Non-Protein Coding RNA 1555 2 3 5
  • C1orf180 3 4
  • Chromosome 1 Open Reading Frame 180 2

External Ids for LINC01555 Gene

Previous HGNC Symbols for LINC01555 Gene

  • C1orf180

Summaries for LINC01555 Gene

GeneCards Summary for LINC01555 Gene

LINC01555 (Long Intergenic Non-Protein Coding RNA 1555) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01555 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01555 Gene

Genomics for LINC01555 Gene

GeneHancer (GH) Regulatory Elements for LINC01555 Gene

Promoters and enhancers for LINC01555 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I084630 Enhancer 1.3 Ensembl ENCODE dbSUPER 550.8 +1.5 1523 5.9 HDAC1 PKNOX1 CLOCK NEUROD1 MZF1 SIN3A RFX5 FOS RCOR1 ELF1 LINC01555 SPATA1 GNG5 RPF1 CTBS ENSG00000232622 LINC01461
GH01I084686 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 5.6 -55.2 -55206 7.2 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 SSX2IP ENSG00000271576 LINC01555 CTBS ENSG00000232622
GH01I084697 Enhancer 1.2 Ensembl ENCODE dbSUPER 5.6 -63.8 -63772 3.4 PKNOX1 ZSCAN4 INSM2 ZNF335 SCRT2 FOS CEBPB ZNF398 ZEB2 MAFF LPAR3 RPF1 SSX2IP LINC01555 CTBS GC01P084746
GH01I084711 Enhancer 0.7 ENCODE dbSUPER 5.8 -77.1 -77084 2.1 FOSL1 IKZF1 FOS ZBTB33 PRDM10 LPAR3 LINC01555 CTBS SSX2IP GC01P084746
GH01I084703 Enhancer 0.6 dbSUPER 5.6 -70.6 -70630 4.2 NR2F1 MCM5 EBF1 IKZF1 PRDM1 RUNX3 IKZF2 SPI1 BCL10 LPAR3 RPF1 SSX2IP LINC01555 GC01P084746
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01555 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01555 Gene

Genomic Locations for LINC01555 Gene
6,791 bases
Minus strand

Genomic View for LINC01555 Gene

Genes around LINC01555 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01555 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01555 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01555 Gene

Proteins for LINC01555 Gene

  • Protein details for LINC01555 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by LINC01555
    Protein Accession:

    Protein attributes for LINC01555 Gene

    123 amino acids
    Molecular mass:
    13125 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01555 Gene

Post-translational modifications for LINC01555 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01555 Gene

Domains & Families for LINC01555 Gene

Protein Domains for LINC01555 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01555: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01555 Gene

Function for LINC01555 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01555 Gene

Localization for LINC01555 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01555 gene
Compartment Confidence
extracellular 3
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01555 Gene

Pathways & Interactions for LINC01555 Gene

SuperPathways for LINC01555 Gene

No Data Available

Interacting Proteins for LINC01555 Gene

Selected Interacting proteins: Q8NAE3-CA180_HUMAN for LINC01555 Gene via UniProtKB

Symbol External ID(s) Details

Gene Ontology (GO) - Biological Process for LINC01555 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01555 Gene

Drugs & Compounds for LINC01555 Gene

No Compound Related Data Available

Transcripts for LINC01555 Gene

mRNA/cDNA for LINC01555 Gene

(1) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01555 Gene

No ASD Table

Relevant External Links for LINC01555 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01555 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01555 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01555 Gene:

genes like me logo Genes that share expression patterns with LINC01555: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01555 Gene

Orthologs for LINC01555 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01555 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C1orf180 34
  • 98 (a)
Species where no ortholog for LINC01555 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01555 Gene

Gene Tree for LINC01555 (if available)
Gene Tree for LINC01555 (if available)

Paralogs for LINC01555 Gene

No data available for Paralogs for LINC01555 Gene

Variants for LINC01555 Gene

Sequence variations from dbSNP and Humsavar for LINC01555 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000488303 -- 84,635,664(-) TCTCCCCCTCT/TCT upstream_transcript_variant
rs1000754844 -- 84,635,924(-) A/G upstream_transcript_variant
rs1001185978 -- 84,632,442(-) C/A intron_variant
rs1001239692 -- 84,632,828(-) C/T intron_variant
rs1001261009 -- 84,631,714(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01555 Gene

Variant ID Type Subtype PubMed ID
dgv60e212 CNV loss 25503493
esv3893779 CNV gain 25118596
nsv1000325 CNV gain 25217958

Variation tolerance for LINC01555 Gene

Gene Damage Index Score: 0.47; 10.17% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01555 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01555 Gene

Disorders for LINC01555 Gene

Additional Disease Information for LINC01555

No disorders were found for LINC01555 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01555 Gene

Publications for LINC01555 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01555 Gene

Sources for LINC01555 Gene

Loading form....