Aliases for LINC01551 Gene

Subcategory (RNA class) for LINC01551 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01551 Gene

  • Long Intergenic Non-Protein Coding RNA 1551 2 3 5
  • LINC01551 2 5 165
  • C14orf23 3 4
  • Uncharacterized Protein Encoded By LINC01551 4
  • Chromosome 14 Open Reading Frame 23 2
  • NONHSAG014591.2 91
  • HSALNG0100291 164
  • HSALNG0100289 164
  • Lnc-FOXG1-11 165
  • C14_5148 3

External Ids for LINC01551 Gene

Previous HGNC Symbols for LINC01551 Gene

  • C14orf23

Summaries for LINC01551 Gene

GeneCards Summary for LINC01551 Gene

LINC01551 (Long Intergenic Non-Protein Coding RNA 1551) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01551 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01551 Gene

Genomics for LINC01551 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01551 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J028771 Promoter/Enhancer 0.9 Ensembl dbSUPER 600.7 +0.4 425 1 POLR2A PATZ1 HMBOX1 ZNF10 CEBPB PRDM6 NFE2L2 HLF EZH2 LINC01551 FOXG1 LINC02282
GH14J028779 Promoter/Enhancer 0.9 EPDnew dbSUPER 600.7 +1.1 1092 0.1 POLR2A PATZ1 EZH2 HMBOX1 ZNF10 CEBPB PRDM6 REST HLF LINC01551 FOXG1 LINC02282
GH14J028770 Enhancer 0.6 dbSUPER 600.7 -0.9 -901 1.3 ZNF692 PRDM1 POLR2A EZH2 ZNF600 ZNF316 MAFF MAFK ZNF384 ZNF366 LINC01551 FOXG1
GH14J028772 Enhancer 0.5 dbSUPER 600.7 +1.2 1209 0.1 POLR2A PATZ1 EZH2 HMBOX1 ZNF10 CEBPB PRDM6 REST HLF LINC01551 FOXG1 LINC02282
GH14J028773 Enhancer 0.5 dbSUPER 600.7 +1.7 1659 0.2 CTCF POLR2A EZH2 ZBTB20 MZF1 LINC01551 FOXG1 LINC02282
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01551 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01551 Gene

Genomic Locations for LINC01551 Gene
chr14:28,771,676-28,823,817
(GRCh38/hg38)
Size:
52,142 bases
Orientation:
Plus strand
chr14:29,241,910-29,282,493
(GRCh37/hg19)
Size:
40,584 bases
Orientation:
Plus strand

Genomic View for LINC01551 Gene

Genes around LINC01551 on UCSC Golden Path with GeneCards custom track
LINC01551 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01551 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01551 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01551 Gene

Proteins for LINC01551 Gene

  • Protein details for LINC01551 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86U37-CN023_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01551
    Protein Accession:
    Q86U37
    Secondary Accessions:
    • A8MT64

    Protein attributes for LINC01551 Gene

    Size:
    167 amino acids
    Molecular mass:
    18828 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAD62579.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for LINC01551 Gene

Post-translational modifications for LINC01551 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC01551 Gene

Domains & Families for LINC01551 Gene

Gene Families for LINC01551 Gene

Protein Domains for LINC01551 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01551: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01551 Gene

Function for LINC01551 Gene

Phenotypes From GWAS Catalog for LINC01551 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC01551 Gene

Localization for LINC01551 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01551 Gene

Pathways & Interactions for LINC01551 Gene

PathCards logo

SuperPathways for LINC01551 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01551 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01551 Gene

Drugs & Compounds for LINC01551 Gene

No Compound Related Data Available

Transcripts for LINC01551 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01551 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B495_9606 lncRNA 815 4

RefSeq: NR_026732,

LncBook: HSALNT0208923,

LNCipedia: LINC01551:2,

NONCODE: NONHSAT168239.1,

URS00007C7BB8_9606 lncRNA 616 4

Ensembl: ENST00000548213 (view in UCSC) ,

LncBook: HSALNT0208926,

LNCipedia: LINC01551:5,

NONCODE: NONHSAT168241.1,

URS00007DCBD7_9606 lncRNA 455 4

Ensembl: ENST00000550266 (view in UCSC) ,

LncBook: HSALNT0208929,

LNCipedia: LINC01551:6,

NONCODE: NONHSAT036159.2,

URS00007D81A7_9606 lncRNA 734 3

Ensembl: ENST00000552957 (view in UCSC) ,

LncBook: HSALNT0208924,

LNCipedia: LINC01551:4,

URS000075E7AC_9606 lncRNA 3141 2

HGNC: 19828,

RefSeq: NR_026731,

LINC01551 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01551 Gene

4 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01551 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5
SP1:
SP2: - -

Relevant External Links for LINC01551 Gene

GeneLoc Exon Structure for
LINC01551

Expression for LINC01551 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01551 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01551

genes like me logo Genes that share expression patterns with LINC01551: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01551 Gene

Orthologs for LINC01551 Gene

Evolution for LINC01551 Gene

ENSEMBL:
Gene Tree for LINC01551 (if available)
TreeFam:
Gene Tree for LINC01551 (if available)

No data available for Orthologs for LINC01551 Gene

Paralogs for LINC01551 Gene

No data available for Paralogs for LINC01551 Gene

Variants for LINC01551 Gene

Additional dbSNP identifiers (rs#s) for LINC01551 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01551 Gene

Variant ID Type Subtype PubMed ID
nsv1227 CNV insertion 18451855
nsv520282 CNV loss 19592680
nsv526536 CNV gain 19592680

Variation tolerance for LINC01551 Gene

Gene Damage Index Score: 0.57; 12.38% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01551 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01551

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01551 Gene

Disorders for LINC01551 Gene

No disorders were found for LINC01551 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01551 Gene

Publications for LINC01551 Gene

  1. Long noncoding LINC01551 promotes hepatocellular carcinoma cell proliferation, migration, and invasion by acting as a competing endogenous RNA of microRNA-122-5p to regulate ADAM10 expression. (PMID: 31270840) Gao J … Zhou F (Journal of cellular biochemistry 2019) 2 3
  2. Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis. (PMID: 20802204) Baranzini SE … Pelletier D (Brain : a journal of neurology 2010) 3
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3
  4. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R … Weissenbach J (Nature 2003) 4

Products for LINC01551 Gene

Sources for LINC01551 Gene