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Aliases for LINC01551 Gene

Subcategory (RNA class) for LINC01551 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01551 Gene

  • Long Intergenic Non-Protein Coding RNA 1551 2 3 5
  • C14orf23 3 4
  • Chromosome 14 Open Reading Frame 23 2
  • C14_5148 3

External Ids for LINC01551 Gene

Previous HGNC Symbols for LINC01551 Gene

  • C14orf23

Summaries for LINC01551 Gene

GeneCards Summary for LINC01551 Gene

LINC01551 (Long Intergenic Non-Protein Coding RNA 1551) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01551 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01551 Gene

Genomics for LINC01551 Gene

GeneHancer (GH) Regulatory Elements for LINC01551 Gene

Promoters and enhancers for LINC01551 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I028778 Enhancer 0.7 dbSUPER 550.8 +1.7 1680 0.1 CTCF SUZ12 RAD21 ZNF2 POLR2A PRDM10 ZNF600 ZBTB20 EZH2 ZNF189 LINC01551 LINC02282
GH14I028770 Enhancer 0.6 dbSUPER 550.8 -1.9 -1929 1.3 PKNOX1 ZNF384 FEZF1 PRDM6 ZNF316 POLR2A ZNF366 ZNF692 ZNF600 MAFK LINC01551 FOXG1-AS1 FOXG1
GH14I028772 Enhancer 0.6 dbSUPER 550.8 +0.5 547 1.4 CTCF HLF ZNF10 CEBPB MZF1 REST PRDM6 POLR2A PATZ1 HMBOX1 LINC01551 LINC02282
GH14I028775 Enhancer 0.5 dbSUPER 550.8 +1.4 1408 0.2 POLR2A L3MBTL2 SUZ12 PRDM10 ZNF600 ZEB2 EZH2 LINC01551 LINC02282
GH14I028774 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.8 +2.0 2039 0.5 CTCF SUZ12 RAD21 ZNF2 POLR2A PRDM10 ZNF600 ZBTB20 EZH2 ZNF654 FOXG1 LINC01551 LINC02282
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01551 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01551 Gene

Genomic Locations for LINC01551 Gene
chr14:28,772,704-28,813,453
(GRCh38/hg38)
Size:
40,750 bases
Orientation:
Plus strand
chr14:29,241,910-29,282,493
(GRCh37/hg19)

Genomic View for LINC01551 Gene

Genes around LINC01551 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01551 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01551 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01551 Gene

Proteins for LINC01551 Gene

  • Protein details for LINC01551 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86U37-CN023_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01551
    Protein Accession:
    Q86U37
    Secondary Accessions:
    • A8MT64

    Protein attributes for LINC01551 Gene

    Size:
    167 amino acids
    Molecular mass:
    18828 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAD62579.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for LINC01551 Gene

Post-translational modifications for LINC01551 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01551 Gene

Domains & Families for LINC01551 Gene

Protein Domains for LINC01551 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01551: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01551 Gene

Function for LINC01551 Gene

Phenotypes From GWAS Catalog for LINC01551 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC01551 Gene

Localization for LINC01551 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01551 gene
Compartment Confidence
mitochondrion 2
nucleus 2
extracellular 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01551 Gene

Pathways & Interactions for LINC01551 Gene

SuperPathways for LINC01551 Gene

No Data Available

Interacting Proteins for LINC01551 Gene

Gene Ontology (GO) - Biological Process for LINC01551 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01551 Gene

Drugs & Compounds for LINC01551 Gene

No Compound Related Data Available

Transcripts for LINC01551 Gene

mRNA/cDNA for LINC01551 Gene

(13) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01551 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5
SP1:
SP2: - -

Relevant External Links for LINC01551 Gene

GeneLoc Exon Structure for
LINC01551
ECgene alternative splicing isoforms for
LINC01551

Expression for LINC01551 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01551 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01551 Gene:

LINC01551
genes like me logo Genes that share expression patterns with LINC01551: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01551 Gene

Orthologs for LINC01551 Gene

Evolution for LINC01551 Gene

ENSEMBL:
Gene Tree for LINC01551 (if available)
TreeFam:
Gene Tree for LINC01551 (if available)

No data available for Orthologs for LINC01551 Gene

Paralogs for LINC01551 Gene

No data available for Paralogs for LINC01551 Gene

Variants for LINC01551 Gene

Sequence variations from dbSNP and Humsavar for LINC01551 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000010189 -- 28,792,014(+) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000035630 -- 28,775,753(+) G/C intron_variant
rs1000041248 -- 28,789,669(+) G/A/C genic_downstream_transcript_variant, intron_variant
rs1000303833 -- 28,785,963(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000328222 -- 28,779,502(+) ATATAT/ATAT genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01551 Gene

Variant ID Type Subtype PubMed ID
nsv526536 CNV gain 19592680
nsv520282 CNV loss 19592680
nsv1227 CNV insertion 18451855

Variation tolerance for LINC01551 Gene

Gene Damage Index Score: 0.57; 12.38% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01551 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01551

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01551 Gene

Disorders for LINC01551 Gene

Additional Disease Information for LINC01551

No disorders were found for LINC01551 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01551 Gene

Publications for LINC01551 Gene

  1. Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis. (PMID: 20802204) Baranzini SE … Pelletier D (Brain : a journal of neurology 2010) 3 58
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  3. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R … Weissenbach J (Nature 2003) 4 58

Products for LINC01551 Gene

Sources for LINC01551 Gene

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