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Aliases for LINC01550 Gene

Subcategory (RNA class) for LINC01550 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01550 Gene

  • Long Intergenic Non-Protein Coding RNA 1550 2 3 5
  • Chromosome 14 Open Reading Frame 64 2
  • C14orf64 3

External Ids for LINC01550 Gene

Previous HGNC Symbols for LINC01550 Gene

  • C14orf64

Summaries for LINC01550 Gene

GeneCards Summary for LINC01550 Gene

LINC01550 (Long Intergenic Non-Protein Coding RNA 1550) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01550 include Gastric Cardia Adenocarcinoma.

Additional gene information for LINC01550 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01550 Gene

Genomics for LINC01550 Gene

GeneHancer (GH) Regulatory Elements for LINC01550 Gene

Promoters and enhancers for LINC01550 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J097975 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 657 +0.3 274 4.9 CTCF RFX1 RAD21 GATA3 ZFHX2 NFATC1 SMC3 FOXP2 EGR2 LINC01550 ENSG00000258379
GH14J097723 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 14.9 +252.5 252477 3.7 CTCF LINC01550 LOC105370651 LINC02312
GH14J097701 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 9.4 +272.1 272064 8.3 CTCF BACH1 BATF RAD21 ETS1 ZNF316 EED NFE2 ETV6 IKZF2 LOC105370651 LINC01550 LINC02291
GH14J098166 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -194.5 -194540 11.8 NR2F1 JUNB EBF1 DPF2 BATF IRF4 BCL11A ZNF26 EED ETV6 RPL3P4 LINC01550 ENSG00000259097 LOC105370655
GH14J097711 Enhancer 0.9 ENCODE dbSUPER 5.2 +265.3 265307 2.1 ZNF639 ZNF473 ZBTB21 JUN ZFP37 ATF2 ZSCAN21 ZNF335 JUND ZNF366 LINC01550 LOC105370651 LINC02312
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01550 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01550 Gene

Genomic Locations for LINC01550 Gene
chr14:97,925,610-97,978,124
(GRCh38/hg38)
Size:
52,515 bases
Orientation:
Minus strand
chr14:98,391,947-98,444,461
(GRCh37/hg19)
Size:
52,515 bases
Orientation:
Minus strand

Genomic View for LINC01550 Gene

Genes around LINC01550 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01550 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01550 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01550 Gene

Proteins for LINC01550 Gene

Post-translational modifications for LINC01550 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01550 Gene

Domains & Families for LINC01550 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01550 Gene

Function for LINC01550 Gene

Phenotypes From GWAS Catalog for LINC01550 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01550 Gene

Localization for LINC01550 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01550 Gene

Pathways & Interactions for LINC01550 Gene

SuperPathways for LINC01550 Gene

No Data Available

Interacting Proteins for LINC01550 Gene

Gene Ontology (GO) - Biological Process for LINC01550 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01550 Gene

Drugs & Compounds for LINC01550 Gene

No Compound Related Data Available

Transcripts for LINC01550 Gene

mRNA/cDNA for LINC01550 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01550 Gene

No ASD Table

Relevant External Links for LINC01550 Gene

GeneLoc Exon Structure for
LINC01550
ECgene alternative splicing isoforms for
LINC01550

Expression for LINC01550 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01550 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01550 Gene:

LINC01550
genes like me logo Genes that share expression patterns with LINC01550: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01550 Gene

Orthologs for LINC01550 Gene

Evolution for LINC01550 Gene

ENSEMBL:
Gene Tree for LINC01550 (if available)
TreeFam:
Gene Tree for LINC01550 (if available)

No data available for Orthologs for LINC01550 Gene

Paralogs for LINC01550 Gene

No data available for Paralogs for LINC01550 Gene

Variants for LINC01550 Gene

Sequence variations from dbSNP and Humsavar for LINC01550 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000024671 -- 97,949,116(-) G/A/T intron_variant
rs1000029283 -- 97,978,811(-) T/G upstream_transcript_variant
rs1000072960 -- 97,955,575(-) T/G intron_variant
rs1000226008 -- 97,933,617(-) C/T intron_variant
rs1000260446 -- 97,974,597(-) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01550 Gene

Variant ID Type Subtype PubMed ID
esv2669181 CNV deletion 23128226
esv3581402 CNV loss 25503493
nsv832868 CNV gain+loss 17160897

Variation tolerance for LINC01550 Gene

Gene Damage Index Score: 0.33; 7.38% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01550 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01550

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01550 Gene

Disorders for LINC01550 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01550 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
gastric cardia adenocarcinoma
  • adenocarcinoma of cardia of stomach
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01550

genes like me logo Genes that share disorders with LINC01550: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01550 Gene

Publications for LINC01550 Gene

  1. Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis. (PMID: 23612905) Zhao SX … China Consortium for the Genetics of Autoimmune Thyroid Disease (Human molecular genetics 2013) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01550 Gene

Sources for LINC01550 Gene

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