Aliases for LINC01548 Gene

RNA type for LINC01548 Gene

lncRNA

Aliases for LINC01548 Gene

External Ids for LINC01548 Gene

Previous HGNC Symbols for LINC01548 Gene

  • C21orf54

Summaries for LINC01548 Gene

GeneCards Summary for LINC01548 Gene

LINC01548 (Long Intergenic Non-Protein Coding RNA 1548) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01548 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01548 Gene

Genomics for LINC01548 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01548 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01548 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01548 Gene

Latest Assembly
chr21:33,164,809-33,170,649
(GRCh38/hg38)
Size:
5,841 bases
Orientation:
Minus strand

Previous Assembly
chr21:34,537,776-34,542,541
(GRCh37/hg19 by Entrez Gene)
Size:
4,766 bases
Orientation:
Minus strand

chr21:34,537,776-34,542,541
(GRCh37/hg19 by Ensembl)
Size:
4,766 bases
Orientation:
Minus strand

Genomic View for LINC01548 Gene

Genes around LINC01548 on UCSC Golden Path with GeneCards custom track
LINC01548 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01548 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01548 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01548 Gene

Proteins for LINC01548 Gene

  • Protein details for LINC01548 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NM66-CU054_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01548
    Protein Accession:
    A6NM66

    Protein attributes for LINC01548 Gene

    Size:
    108 amino acids
    Molecular mass:
    11668 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01548 Gene

Post-translational modifications for LINC01548 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01548 Gene

Domains & Families for LINC01548 Gene

Gene Families for LINC01548 Gene

genes like me logo Genes that share domains with LINC01548: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01548 Gene

Function for LINC01548 Gene

Phenotypes From GWAS Catalog for LINC01548 Gene

genes like me logo Genes that share phenotypes with LINC01548: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01548 Gene

Localization for LINC01548 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01548 Gene

Pathways & Interactions for LINC01548 Gene

PathCards logo

SuperPathways for LINC01548 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01548 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01548 Gene

Drugs & Compounds for LINC01548 Gene

No Compound Related Data Available

Transcripts for LINC01548 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01548 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000A7AA47_9606 lncRNA 458 2

Ensembl: ENST00000637328 (view in UCSC) ,

LNCipedia: LINC01548:3,

URS0000EEF2B8_9606 lncRNA 1357 1

Ensembl: ENST00000451980 (view in UCSC) ,

URS000075CA4D_9606 lncRNA 595 1

RefSeq: NR_024102,

URS0000A96B14_9606 lncRNA 701 2

LncBook: HSALNT0272869,

LNCipedia: LINC01548:2,

URS0001BD3743_9606 lncRNA 696 1

LncBook: HSALNT0272869,

LINC01548 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01548 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01548 Gene

No ASD Table

Relevant External Links for LINC01548 Gene

GeneLoc Exon Structure for
LINC01548

Expression for LINC01548 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01548 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01548

genes like me logo Genes that share expression patterns with LINC01548: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01548 Gene

Orthologs for LINC01548 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01548 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C21orf54 30
  • 97 (a)
OneToOne
Species where no ortholog for LINC01548 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC01548 Gene

ENSEMBL:
Gene Tree for LINC01548 (if available)
TreeFam:
Gene Tree for LINC01548 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01548

Paralogs for LINC01548 Gene

No data available for Paralogs for LINC01548 Gene

Variants for LINC01548 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01548 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01548 Gene

Variant ID Type Subtype PubMed ID
esv3568157 CNV loss 25503493
nsv1114286 CNV deletion 24896259

Variation tolerance for LINC01548 Gene

Gene Damage Index Score: 1.27; 25.27% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01548 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01548
Leiden Open Variation Database (LOVD)
LINC01548

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01548 Gene

Disorders for LINC01548 Gene

Additional Disease Information for LINC01548

No disorders were found for LINC01548 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01548 Gene

Publications for LINC01548 Gene

  1. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 4
  2. A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network. (PMID: 22228203) Aslibekyan S … Arnett DK (Pharmacogenetics and genomics 2012) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for LINC01548 Gene

Sources for LINC01548 Gene