Aliases for LINC01548 Gene

Subcategory (RNA class) for LINC01548 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC01548 Gene

  • Long Intergenic Non-Protein Coding RNA 1548 2 3 5
  • LINC01548 2 168
  • C21orf54 3 4
  • Uncharacterized Protein Encoded By LINC01548 4
  • Chromosome 21 Open Reading Frame 54 2
  • HSALNG0132745 167
  • HCG2045804 3

External Ids for LINC01548 Gene

Previous HGNC Symbols for LINC01548 Gene

  • C21orf54

Summaries for LINC01548 Gene

GeneCards Summary for LINC01548 Gene

LINC01548 (Long Intergenic Non-Protein Coding RNA 1548) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01548 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01548 Gene

Genomics for LINC01548 Gene

GeneHancer (GH) Regulatory Elements for LINC01548 Gene

Promoters and enhancers for LINC01548 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J033167 Enhancer 0.7 Ensembl dbSUPER 500.7 +1.4 1371 1 SP1 RFX1 NFYB POLR2A PBX2 SPI1 IRF2 PBX3 PKNOX1 PRDM1 LINC01548 RF00017-3689 ENSG00000226433 NONHSAG032698.2
GH21J033196 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.3 -32.1 -32089 12.5 CTCF TCF12 POLR2G NCOR1 JUND FOS ZNF639 ZNF10 KDM6A REST TMEM50B PAXBP1 SON EVA1C DONSON GART IFNAR2 IFNGR2 URB1 LINC01548
GH21J033214 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 10.2 -45.6 -45637 3.9 ZBTB40 SIN3A USF1 SP1 EP300 AFF1 RELA HES1 MEF2C TOE1 lnc-TMEM50B-7 IL10RB IFNGR2 LINC01548 IFNAR2 GART IFNAR1 SYNJ1 SON NONHSAG032698.2
GH21J033058 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 9.8 +111.3 111328 1.3 WT1 CEBPB NFIC MAFF CTCF CEBPG MAFK PKNOX1 REST TCF7L2 LINC00945 IFNGR2 LINC01548 IL10RB IFNAR2 OLIG1 GART IFNAR1 SON SYNJ1
GH21J033121 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.9 +48.5 48474 0.7 SP1 FOS NFYB ZNF341 RBM25 MBD2 NEUROD1 NFIC SP2 PBX2 ENSG00000226527 LOC101928107 LINC01548 ENSG00000227757 OLIG1 lnc-OLIG1-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01548 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01548 Gene

Genomic Locations for LINC01548 Gene
chr21:33,164,809-33,170,649
(GRCh38/hg38)
Size:
5,841 bases
Orientation:
Minus strand
chr21:34,537,776-34,542,541
(GRCh37/hg19)
Size:
4,766 bases
Orientation:
Minus strand

Genomic View for LINC01548 Gene

Genes around LINC01548 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01548 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01548 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01548 Gene

Proteins for LINC01548 Gene

  • Protein details for LINC01548 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NM66-CU054_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01548
    Protein Accession:
    A6NM66

    Protein attributes for LINC01548 Gene

    Size:
    108 amino acids
    Molecular mass:
    11668 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01548 Gene

Post-translational modifications for LINC01548 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01548 Gene

Domains & Families for LINC01548 Gene

Protein Domains for LINC01548 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01548: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01548 Gene

Function for LINC01548 Gene

Phenotypes From GWAS Catalog for LINC01548 Gene

genes like me logo Genes that share phenotypes with LINC01548: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01548 Gene

Localization for LINC01548 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01548 Gene

Pathways & Interactions for LINC01548 Gene

PathCards logo

SuperPathways for LINC01548 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01548 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01548 Gene

Drugs & Compounds for LINC01548 Gene

No Compound Related Data Available

Transcripts for LINC01548 Gene

mRNA/cDNA for LINC01548 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LncBook transcripts :
3 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01548 Gene

No ASD Table

Relevant External Links for LINC01548 Gene

GeneLoc Exon Structure for
LINC01548

Expression for LINC01548 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01548 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01548

genes like me logo Genes that share expression patterns with LINC01548: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01548 Gene

Orthologs for LINC01548 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01548 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C21orf54 31
  • 97 (a)
OneToOne
Species where no ortholog for LINC01548 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01548 Gene

ENSEMBL:
Gene Tree for LINC01548 (if available)
TreeFam:
Gene Tree for LINC01548 (if available)

Paralogs for LINC01548 Gene

No data available for Paralogs for LINC01548 Gene

Variants for LINC01548 Gene

Additional dbSNP identifiers (rs#s) for LINC01548 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01548 Gene

Variant ID Type Subtype PubMed ID
esv3568157 CNV loss 25503493
nsv1114286 CNV deletion 24896259

Variation tolerance for LINC01548 Gene

Gene Damage Index Score: 1.27; 25.27% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01548 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01548

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01548 Gene

Disorders for LINC01548 Gene

Additional Disease Information for LINC01548

No disorders were found for LINC01548 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01548 Gene

Publications for LINC01548 Gene

  1. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 4 54
  2. A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network. (PMID: 22228203) Aslibekyan S … Arnett DK (Pharmacogenetics and genomics 2012) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 54

Products for LINC01548 Gene

Sources for LINC01548 Gene