Aliases for LINC01547 Gene

Subcategory (RNA class) for LINC01547 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC01547 Gene

  • Long Intergenic Non-Protein Coding RNA 1547 2 3 5
  • LINC01547 2 168
  • C21orf67 3 4
  • C21orf69 3 4
  • Uncharacterized Protein Encoded By LINC01547 4
  • Chromosome 21 Open Reading Frame 69 2
  • Chromosome 21 Open Reading Frame 67 2
  • HSALNG0133586 167
  • PRED54 3

External Ids for LINC01547 Gene

Previous HGNC Symbols for LINC01547 Gene

  • C21orf69
  • C21orf67

Summaries for LINC01547 Gene

GeneCards Summary for LINC01547 Gene

LINC01547 (Long Intergenic Non-Protein Coding RNA 1547) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01547 include Twin-To-Twin Transfusion Syndrome and Neonatal Anemia.

Additional gene information for LINC01547 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01547 Gene

Genomics for LINC01547 Gene

GeneHancer (GH) Regulatory Elements for LINC01547 Gene

Promoters and enhancers for LINC01547 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01547 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01547 Gene

Genomic Locations for LINC01547 Gene
chr21:44,932,814-44,939,937
(GRCh38/hg38)
Size:
7,124 bases
Orientation:
Minus strand
chr21:46,352,729-46,359,828
(GRCh37/hg19)
Size:
7,100 bases
Orientation:
Minus strand

Genomic View for LINC01547 Gene

Genes around LINC01547 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01547 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01547 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01547 Gene

Proteins for LINC01547 Gene

  • Protein details for LINC01547 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P58512-CU067_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01547
    Protein Accession:
    P58512
    Secondary Accessions:
    • P58556
    • Q495D3
    • Q495D5

    Protein attributes for LINC01547 Gene

    Size:
    204 amino acids
    Molecular mass:
    21308 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAK60445.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for LINC01547 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LINC01547 Gene

Post-translational modifications for LINC01547 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01547 Gene

Domains & Families for LINC01547 Gene

Protein Domains for LINC01547 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01547: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01547 Gene

Function for LINC01547 Gene

Phenotypes From GWAS Catalog for LINC01547 Gene

genes like me logo Genes that share phenotypes with LINC01547: view

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01547

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01547 Gene

Localization for LINC01547 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01547 gene
Compartment Confidence
extracellular 1

Gene Ontology (GO) - Cellular Components for LINC01547 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum HDA 16780588
genes like me logo Genes that share ontologies with LINC01547: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for LINC01547 Gene

Pathways & Interactions for LINC01547 Gene

PathCards logo

SuperPathways for LINC01547 Gene

No Data Available

Interacting Proteins for LINC01547 Gene

Selected Interacting proteins: P58512-CU067_HUMAN for LINC01547 Gene via IID

;

Gene Ontology (GO) - Biological Process for LINC01547 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01547 Gene

Drugs & Compounds for LINC01547 Gene

No Compound Related Data Available

Transcripts for LINC01547 Gene

mRNA/cDNA for LINC01547 Gene

16 RNACentral transcripts :
5 REFSEQ mRNAs :
13 NCBI additional mRNA sequence :
10 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LncBook transcripts :
6 LNCipedia transcripts :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01547

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01547 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7
SP1: -
SP2: - - - -
SP3: -
SP4:

Relevant External Links for LINC01547 Gene

GeneLoc Exon Structure for
LINC01547

Expression for LINC01547 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01547 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01547

mRNA Expression by UniProt/SwissProt for LINC01547 Gene:

P58512-CU067_HUMAN
Tissue specificity: Not detected in any tissue tested.
genes like me logo Genes that share expression patterns with LINC01547: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01547 Gene

Orthologs for LINC01547 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01547 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C21orf67 31
  • 96 (a)
OneToOne
Species where no ortholog for LINC01547 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01547 Gene

ENSEMBL:
Gene Tree for LINC01547 (if available)
TreeFam:
Gene Tree for LINC01547 (if available)

Paralogs for LINC01547 Gene

No data available for Paralogs for LINC01547 Gene

Variants for LINC01547 Gene

Additional dbSNP identifiers (rs#s) for LINC01547 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01547 Gene

Variant ID Type Subtype PubMed ID
esv3647138 CNV loss 21293372
nsv834110 CNV loss 17160897

Variation tolerance for LINC01547 Gene

Gene Damage Index Score: 1.48; 28.93% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01547 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01547

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01547 Gene

Disorders for LINC01547 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC01547 Gene - From: DISEASES

Disorder Aliases PubMed IDs
twin-to-twin transfusion syndrome
  • twin twin transfusion syndrome
neonatal anemia
  • anemia neonatal
orofaciodigital syndrome viii
  • cleft lip/palate with abnormal thumbs and microcephaly
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01547

genes like me logo Genes that share disorders with LINC01547: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01547 Gene

Publications for LINC01547 Gene

  1. From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map. (PMID: 11707072) Reymond A … Antonarakis SE (Genomics 2001) 2 3 4 23 54
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 54
  3. A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene. (PMID: 19490893) Luo J … Elledge SJ (Cell 2009) 3 54
  4. Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins. (PMID: 16780588) Hu YH … Janitz M (BMC genomics 2006) 3 54
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 54

Products for LINC01547 Gene

Sources for LINC01547 Gene