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Aliases for LINC01545 Gene

Subcategory (RNA class) for LINC01545 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01545 Gene

  • Long Intergenic Non-Protein Coding RNA 1545 2 3 5
  • CXorf31 3 4
  • Chromosome X Open Reading Frame 31 2

External Ids for LINC01545 Gene

Previous HGNC Symbols for LINC01545 Gene

  • CXorf31

Summaries for LINC01545 Gene

GeneCards Summary for LINC01545 Gene

LINC01545 (Long Intergenic Non-Protein Coding RNA 1545) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01545 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01545 Gene

Genomics for LINC01545 Gene

GeneHancer (GH) Regulatory Elements for LINC01545 Gene

Promoters and enhancers for LINC01545 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI046903 Enhancer 1.1 Ensembl ENCODE 0.8 -4.2 -4232 1.3 PKNOX1 ARID4B SIN3A ZNF2 GLIS2 ZNF143 RXRA MXD4 REST NBN SLC9A7 LINC01545 JADE3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01545 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01545 Gene

Genomic Locations for LINC01545 Gene
12,288 bases
Minus strand

Genomic View for LINC01545 Gene

Genes around LINC01545 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01545 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01545 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01545 Gene

Proteins for LINC01545 Gene

  • Protein details for LINC01545 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by LINC01545
    Protein Accession:

    Protein attributes for LINC01545 Gene

    79 amino acids
    Molecular mass:
    9515 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01545 Gene

Post-translational modifications for LINC01545 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01545 Gene

Domains & Families for LINC01545 Gene

Protein Domains for LINC01545 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01545: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01545 Gene

Function for LINC01545 Gene

Animal Model Products

miRNA for LINC01545 Gene

miRTarBase miRNAs that target LINC01545

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC01545 Gene

Localization for LINC01545 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01545 gene
Compartment Confidence
nucleus 2
mitochondrion 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01545 Gene

Pathways & Interactions for LINC01545 Gene

SuperPathways for LINC01545 Gene

No Data Available

Interacting Proteins for LINC01545 Gene

Gene Ontology (GO) - Biological Process for LINC01545 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01545 Gene

Drugs & Compounds for LINC01545 Gene

No Compound Related Data Available

Transcripts for LINC01545 Gene

mRNA/cDNA for LINC01545 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01545 Gene

No ASD Table

Relevant External Links for LINC01545 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01545 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01545 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01545 Gene:

genes like me logo Genes that share expression patterns with LINC01545: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01545 Gene

Orthologs for LINC01545 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01545 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CXorf31 34
  • 99 (a)
Species where no ortholog for LINC01545 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01545 Gene

Gene Tree for LINC01545 (if available)
Gene Tree for LINC01545 (if available)

Paralogs for LINC01545 Gene

No data available for Paralogs for LINC01545 Gene

Variants for LINC01545 Gene

Sequence variations from dbSNP and Humsavar for LINC01545 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000361441 -- 46,894,304(-) C/A intron_variant
rs1000912176 -- 46,896,924(-) G/A intron_variant
rs1001250074 -- 46,897,255(-) G/A/T intron_variant
rs1001809391 -- 46,900,572(-) G/A upstream_transcript_variant
rs1001902570 -- 46,888,202(-) A/G intron_variant

Variation tolerance for LINC01545 Gene

Gene Damage Index Score: 0.01; 0.12% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01545 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01545 Gene

Disorders for LINC01545 Gene

Additional Disease Information for LINC01545

No disorders were found for LINC01545 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01545 Gene

Publications for LINC01545 Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01545 Gene

Sources for LINC01545 Gene

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