Aliases for LINC01544 Gene

Data sources for LINC01544 Gene:

Subcategory (RNA class) for LINC01544 Gene

lncRNA

Aliases for LINC01544 Gene

External Ids for LINC01544 Gene

Summaries for LINC01544 Gene

GeneCards Summary for LINC01544 Gene

LINC01544 (Long Intergenic Non-Protein Coding RNA 1544) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01544 include Nasopharyngeal Carcinoma.

Additional gene information for LINC01544 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01544 Gene

Genomics for LINC01544 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01544 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J061747 Enhancer 0.4 Ensembl ENCODE 256.3 +0.7 719 2.8 REST LINC01544 ENSG00000267175 RNF152 CDH20
GH18J061742 Enhancer 0.5 Ensembl ENCODE 0.7 -4.0 -3981 3 ATF2 ATF7 RNF152 ENSG00000267038 LINC01544 ENSG00000267175 lnc-CDH20-6 CDH20
GH18J061753 Enhancer 0.4 Ensembl 0.4 +6.0 6019 1.4 RAD51 HNF4A USF2 TOE1 ENSG00000267175 LINC01544 piR-31199-154 RNF152 CDH20
GH18J061751 Enhancer 0.2 Ensembl 0.7 +3.8 3819 0.6 ENSG00000267175 LINC01544 piR-31199-154 RNF152 CDH20
GH18J061743 Enhancer 0.2 FANTOM5 0.4 -5.6 -5606 0.1 lnc-CDH20-6 ENSG00000267175 LINC01544 RNF152 CDH20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01544 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01544 Gene

Latest Assembly
chr18:61,747,882-61,758,472
(GRCh38/hg38)
Size:
10,591 bases
Orientation:
Plus strand

Previous Assembly
chr18:59,415,409-59,421,928
(GRCh37/hg19 by Entrez Gene)
Size:
6,520 bases
Orientation:
Plus strand

chr18:59,415,409-59,421,928
(GRCh37/hg19 by Ensembl)
Size:
6,520 bases
Orientation:
Plus strand

Genomic View for LINC01544 Gene

Genes around LINC01544 on UCSC Golden Path with GeneCards custom track
LINC01544 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01544 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01544 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01544 Gene

Proteins for LINC01544 Gene

Post-translational modifications for LINC01544 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01544 Gene

Domains & Families for LINC01544 Gene

Gene Families for LINC01544 Gene

genes like me logo Genes that share domains with LINC01544: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01544 Gene

Function for LINC01544 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01544 Gene

Localization for LINC01544 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01544 Gene

Pathways & Interactions for LINC01544 Gene

PathCards logo

SuperPathways for LINC01544 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01544 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01544 Gene

Drugs & Compounds for LINC01544 Gene

No Compound Related Data Available

Transcripts for LINC01544 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01544 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000006BD7A_9606 lncRNA 3217 4

RefSeq: NR_103449,

LncBook: HSALNT0252152,

LNCipedia: LINC01544:2,

NONCODE: NONHSAT059611.2,

URS0000EF1111_9606 lncRNA 5262 1

Ensembl: ENST00000567801 (view in UCSC) ,

URS0000EF4A79_9606 lncRNA 2143 1

Ensembl: ENST00000663426 (view in UCSC) ,

URS00008B6BFE_9606 lncRNA 2502 3

LncBook: HSALNT0252154,

LNCipedia: LINC01544:4,

NONCODE: NONHSAT059612.2,

URS000077D72F_9606 lncRNA 5172 2

LncBook: HSALNT0252150,

LNCipedia: LINC01544:3,

LINC01544 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01544 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01544 Gene

No ASD Table

Relevant External Links for LINC01544 Gene

GeneLoc Exon Structure for
LINC01544

Expression for LINC01544 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01544 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01544

genes like me logo Genes that share expression patterns with LINC01544: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01544 Gene

Orthologs for LINC01544 Gene

Evolution for LINC01544 Gene

ENSEMBL:
Gene Tree for LINC01544 (if available)
TreeFam:
Gene Tree for LINC01544 (if available)

No data available for Orthologs for LINC01544 Gene

Paralogs for LINC01544 Gene

No data available for Paralogs for LINC01544 Gene

Variants for LINC01544 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01544 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01544 Gene

Variant ID Type Subtype PubMed ID
nsv1059992 CNV loss 25217958

Additional Variant Information for LINC01544 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01544

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01544 Gene

Disorders for LINC01544 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01544 Gene - From: LNC

Disorder Aliases PubMed IDs
nasopharyngeal carcinoma
  • npca
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01544

genes like me logo Genes that share disorders with LINC01544: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01544 Gene

Publications for LINC01544 Gene

  1. Curcumin enhances the radiosensitivity in nasopharyngeal carcinoma cells involving the reversal of differentially expressed long non-coding RNAs. (PMID: 24379026) Wang Q … Fan Q (International journal of oncology 2014) 74
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01544 Gene

Sources for LINC01544 Gene