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LINC01539 (Long Intergenic Non-Protein Coding RNA 1539) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH18J056137 | Promoter | 0.3 | EPDnew | 600.7 | +0.0 | 8 | 0.1 | ENSG00000267732 LINC01539 LOC105372132 LOC642484 TCF4 WDR7 | ||
GH18J056112 | Enhancer | 0.8 | Ensembl | 0.4 | +22.7 | 22735 | 5.6 | BACH1 STAT3 JUND RELA TCF12 IKZF2 PKNOX1 EED ARID3A HMBOX1 | ENSG00000201816 LINC01539 ENSG00000267732 LOC642484 LINC01905 TCF4 WDR7 | |
GH18J056127 | Enhancer | 0.5 | FANTOM5 Ensembl | 0.4 | +9.9 | 9935 | 1.6 | CEBPB NFIC | ENSG00000267732 LINC01539 ENSG00000201816 LOC642484 LINC01905 TCF4 WDR7 | |
GH18J056123 | Enhancer | 0.6 | Ensembl ENCODE | 0.4 | +13.1 | 13135 | 1.6 | CEBPB FOS BHLHE40 | LINC01539 ENSG00000267732 ENSG00000201816 LOC642484 LINC01905 TCF4 WDR7 | |
GH18J056082 | Enhancer | 0.6 | Ensembl ENCODE | 0.2 | +53.8 | 53838 | 4.6 | CTCF CEBPB NR2F2 RAD21 JUN | LOC642484 ENSG00000201816 ENSG00000267732 LINC01539 LINC01905 TCF4 WDR7 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS0000759985_9606 | lncRNA | 2093 | 5 |
HGNC: 51307, RefSeq: NR_040025, LncBook: HSALNT0251609, LNCipedia: LINC01539:5, NONCODE: NONHSAT059405.2, |
URS0000158AB6_9606 | lncRNA | 1884 | 4 |
RefSeq: NR_040026, Ensembl: ENST00000591974 (view in UCSC) , LNCipedia: LINC01539:6, NONCODE: NONHSAT059406.2, |
URS0000455D3F_9606 | lncRNA | 678 | 4 |
Ensembl: ENST00000593282 (view in UCSC) , LncBook: HSALNT0251615, LNCipedia: LINC01539:14, NONCODE: NONHSAT059409.2, |
URS00002BF94D_9606 | lncRNA | 575 | 4 |
Ensembl: ENST00000589447 (view in UCSC) , LncBook: HSALNT0251625, LNCipedia: LINC01539:15, NONCODE: NONHSAT059415.2, |
URS00002F406C_9606 | lncRNA | 2068 | 3 |
Ensembl: ENST00000587904 (view in UCSC) , LncBook: HSALNT0251610, LNCipedia: LINC01539:7, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv1611n106 | CNV | deletion | 24896259 |
dgv1612n106 | CNV | deletion | 24896259 |
dgv202e215 | CNV | deletion | 23714750 |
esv1107800 | CNV | deletion | 17803354 |
esv2506493 | CNV | deletion | 19546169 |
esv25232 | CNV | loss | 19812545 |
esv2677523 | CNV | deletion | 23128226 |
esv2717134 | CNV | deletion | 23290073 |
esv2717135 | CNV | deletion | 23290073 |
esv3309728 | CNV | mobile element insertion | 20981092 |
esv3405855 | CNV | insertion | 20981092 |
esv3642604 | CNV | loss | 21293372 |
nsv1126363 | CNV | deletion | 24896259 |
nsv1141911 | CNV | deletion | 24896259 |
nsv1146590 | CNV | deletion | 26484159 |
nsv477130 | CNV | novel sequence insertion | 20440878 |
nsv833661 | CNV | gain | 17160897 |
No disorders were found for LINC01539 Gene.