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Aliases for LINC01539 Gene
Subcategory (RNA class) for LINC01539 Gene
lncRNA
Aliases for LINC01539 Gene
External Ids for LINC01539 Gene
- HGNC: 51307
- NCBI Entrez Gene: 100505474
- Ensembl: ENSG00000267712
Summaries for LINC01539 Gene
GeneCards Summary for LINC01539 Gene
LINC01539 (Long Intergenic Non-Protein Coding RNA 1539) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01539 Gene
- HGNC (51307)
- NCBI Entrez Gene (100505474)
- Ensembl (ENSG00000267712)
- Open Targets Platform(ENSG00000267712)
- Monarch Initiative
- Search for LINC01539 at DataMed
- Search for LINC01539 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01539 Gene
Genomics for LINC01539 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01539 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18J056137 | Promoter | 0.3 | EPDnew | 250.7 | +0.0 | 8 | 0.1 | ENSG00000267732 LINC01539 LOC105372132 LOC642484 TCF4 WDR7 | ||
| GH18J056112 | Enhancer | 0.8 | Ensembl | 0.3 | +22.6 | 22636 | 5.4 | BCL11A IRF4 EBF1 FOSL1 CBFB SPI1 BHLHE40 BATF STAT5A ZNF24 | ENSG00000201816 LINC01539 ENSG00000267732 HSALNG0121713 LOC642484 LINC01905 TCF4 WDR7 | |
| GH18J056127 | Enhancer | 0.5 | FANTOM5 Ensembl | 0.4 | +9.9 | 9935 | 1.6 | CEBPB NFIC | ENSG00000267732 LINC01539 HSALNG0121713 LOC642484 LINC01905 TCF4 WDR7 | |
| GH18J056123 | Enhancer | 0.6 | Ensembl ENCODE | 0.4 | +13.1 | 13136 | 1.2 | BHLHE40 CEBPB FOS | LINC01539 ENSG00000267732 HSALNG0121713 LOC642484 LINC01905 TCF4 WDR7 | |
| GH18J056082 | Enhancer | 0.6 | Ensembl ENCODE | 0.2 | +54.1 | 54135 | 4 | CTCF RAD21 NR2F2 | LOC642484 HSALNG0121713 ENSG00000267732 LINC01539 LINC01905 TCF4 WDR7 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01539 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01539 Gene
Latest Assembly
- chr18:56,083,355-56,137,536
- (GRCh38/hg38)
- Size:
- 54,182 bases
- Orientation:
- Minus strand
Previous Assembly
- chr18:53,750,587-53,804,767
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 54,181 bases
- Orientation:
- Minus strand
- chr18:53,750,587-53,804,767
- (GRCh37/hg19 by Ensembl)
- Size:
- 54,181 bases
- Orientation:
- Minus strand
Genomic View for LINC01539 Gene
Genes around LINC01539 on UCSC Golden Path with GeneCards custom track
LINC01539 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 18q21.2 by HGNC
- 18q21.2 by Entrez Gene
- 18q21.2 by Ensembl
LINC01539 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01539 Gene
Proteins for LINC01539 Gene
Post-translational modifications for LINC01539 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01539 Gene
Domains & Families for LINC01539 Gene
Gene Families for LINC01539 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01539 Gene
Function for LINC01539 Gene
Phenotypes From GWAS Catalog for LINC01539 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01539 Gene
Localization for LINC01539 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01539 Gene
Transcripts for LINC01539 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01539 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000759985_9606 | lncRNA | 2093 | 4 |
RefSeq: NR_040025, LncBook: HSALNT0251609, LNCipedia: LINC01539:5, NONCODE: NONHSAT059405.2, |
| URS0000158AB6_9606 | lncRNA | 1893 | 4 |
RefSeq: NR_040026, Ensembl: ENST00000591974 (view in UCSC) , LNCipedia: LINC01539:6, NONCODE: NONHSAT059406.2, |
| URS0000455D3F_9606 | lncRNA | 681 | 4 |
Ensembl: ENST00000593282 (view in UCSC) , LncBook: HSALNT0251615, LNCipedia: LINC01539:14, NONCODE: NONHSAT059409.2, |
| URS00002BF94D_9606 | lncRNA | 575 | 4 |
Ensembl: ENST00000589447 (view in UCSC) , LncBook: HSALNT0251625, LNCipedia: LINC01539:15, NONCODE: NONHSAT059415.2, |
| URS00002F406C_9606 | lncRNA | 2068 | 3 |
Ensembl: ENST00000587904 (view in UCSC) , LncBook: HSALNT0251610, LNCipedia: LINC01539:7, |
LINC01539 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01539 Gene
- 2 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01539 Gene
- GeneLoc Exon Structure for
- LINC01539
Expression for LINC01539 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01539
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01539 Gene
Orthologs for LINC01539 Gene
No data available for Orthologs for LINC01539 Gene
Paralogs for LINC01539 Gene
No data available for Paralogs for LINC01539 Gene
Variants for LINC01539 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1611n106 | CNV | deletion | 24896259 |
| dgv1612n106 | CNV | deletion | 24896259 |
| dgv202e215 | CNV | deletion | 23714750 |
| esv1107800 | CNV | deletion | 17803354 |
| esv2506493 | CNV | deletion | 19546169 |
| esv25232 | CNV | loss | 19812545 |
| esv2677523 | CNV | deletion | 23128226 |
| esv2717134 | CNV | deletion | 23290073 |
| esv2717135 | CNV | deletion | 23290073 |
| esv3309728 | CNV | mobile element insertion | 20981092 |
| esv3405855 | CNV | insertion | 20981092 |
| esv3642604 | CNV | loss | 21293372 |
| nsv1126363 | CNV | deletion | 24896259 |
| nsv1141911 | CNV | deletion | 24896259 |
| nsv1146590 | CNV | deletion | 26484159 |
| nsv477130 | CNV | novel sequence insertion | 20440878 |
| nsv833661 | CNV | gain | 17160897 |
Additional Variant Information for LINC01539 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01539
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01539 Gene
Disorders for LINC01539 Gene
Additional Disease Information for LINC01539
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC01539 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01539 Gene
Publications for LINC01539 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for LINC01539 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01539
- Origene Custom Protein Services for LINC01539
- Browse OriGene Inhibitory RNA Products For LINC01539
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01539
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01539
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01539
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01539
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01539
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01539
Sources for LINC01539 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB