Aliases for LINC01538 Gene

Data sources for LINC01538 Gene:

Subcategory (RNA class) for LINC01538 Gene

lncRNA

Aliases for LINC01538 Gene

External Ids for LINC01538 Gene

Summaries for LINC01538 Gene

GeneCards Summary for LINC01538 Gene

LINC01538 (Long Intergenic Non-Protein Coding RNA 1538) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01538 include Hereditary Hemorrhagic Telangiectasia.

Additional gene information for LINC01538 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01538 Gene

Genomics for LINC01538 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01538 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J064260 Promoter 0.3 EPDnew 250.2 +66.7 66696 0.1 LINC01538 piR-30188-085 MF281438-012 LINC01924 SERPINB8
GH18J064271 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 +51.9 51865 7.4 RXRA FOXA2 ZBTB33 JUND HNF4A RAD21 REST MAX SP1 POU5F1 piR-30188-085 piR-53338-069 MF281438-012 LINC01538 LINC01924 SERPINB8
GH18J064287 Enhancer 0.5 ENCODE 0.3 +38.2 38175 1.2 RXRA HNF4A RAD21 MAX SP1 YY1 HNF4G ATF3 piR-53338-069 LINC01538 LINC01924 SERPINB8
GH18J064253 Enhancer 0.6 ENCODE 0.2 +72.2 72208 1.6 CEBPB RXRA ZBTB33 JUND HNF4A RAD21 REST MAX SP1 YY1 MF281438-012 piR-30188-085 LINC01538 LINC01924 SERPINB8
GH18J064365 Enhancer 0.4 Ensembl 0.3 -38.9 -38850 0.4 BATF JUNB ETV6 LINC01538 piR-48222-164 LINC01924 SERPINB8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01538 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01538 Gene

Latest Assembly
chr18:64,181,057-64,326,751
(GRCh38/hg38)
Size:
145,695 bases
Orientation:
Minus strand

Previous Assembly
chr18:61,880,317-61,927,290
(GRCh37/hg19 by Entrez Gene)
Size:
46,974 bases
Orientation:
Minus strand

chr18:61,880,317-61,927,290
(GRCh37/hg19 by Ensembl)
Size:
46,974 bases
Orientation:
Minus strand

Genomic View for LINC01538 Gene

Genes around LINC01538 on UCSC Golden Path with GeneCards custom track
LINC01538 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01538 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01538 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01538 Gene

Proteins for LINC01538 Gene

Post-translational modifications for LINC01538 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01538 Gene

Domains & Families for LINC01538 Gene

Gene Families for LINC01538 Gene

genes like me logo Genes that share domains with LINC01538: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01538 Gene

Function for LINC01538 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01538 Gene

Localization for LINC01538 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01538 Gene

Pathways & Interactions for LINC01538 Gene

PathCards logo

SuperPathways for LINC01538 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01538 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01538 Gene

Drugs & Compounds for LINC01538 Gene

No Compound Related Data Available

Transcripts for LINC01538 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01538 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003AAB1B_9606 lncRNA 2411 3

Ensembl: ENST00000588074 (view in UCSC) ,

LNCipedia: LINC01538:2,

NONCODE: NONHSAT059690.2,

URS000075C66D_9606 lncRNA 2407 1

RefSeq: NR_033983,

URS0000DB7B31_9606 lncRNA 1127 1

Ensembl: ENST00000649058 (view in UCSC) ,

URS0001BE545E_9606 lncRNA 5400 1

LncBook: HSALNT0252402,

URS00008BC473_9606 lncRNA 2410 1

LNCipedia: LINC01538:3,

LINC01538 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01538 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01538 Gene

No ASD Table

Relevant External Links for LINC01538 Gene

GeneLoc Exon Structure for
LINC01538

Expression for LINC01538 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01538 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01538

genes like me logo Genes that share expression patterns with LINC01538: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01538 Gene

Orthologs for LINC01538 Gene

Evolution for LINC01538 Gene

ENSEMBL:
Gene Tree for LINC01538 (if available)
TreeFam:
Gene Tree for LINC01538 (if available)

No data available for Orthologs for LINC01538 Gene

Paralogs for LINC01538 Gene

No data available for Paralogs for LINC01538 Gene

Variants for LINC01538 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01538 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01538 Gene

Variant ID Type Subtype PubMed ID
dgv3377n100 CNV gain 25217958
esv21739 CNV gain 19812545
esv2762855 CNV gain 21179565
esv3642789 CNV gain 21293372
nsv1066552 CNV gain 25217958
nsv1067311 CNV loss 25217958

Additional Variant Information for LINC01538 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01538

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01538 Gene

Disorders for LINC01538 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01538 Gene - From: LNC

Disorder Aliases PubMed IDs
hereditary hemorrhagic telangiectasia
  • osler hemorrhagic telangiectasia syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01538

genes like me logo Genes that share disorders with LINC01538: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01538 Gene

Publications for LINC01538 Gene

  1. Competing endogenous RNA network crosstalk reveals novel molecular markers in colorectal cancer. (PMID: 29737552) Samir N … El-Asmar F (Journal of cellular biochemistry 2018) 2 3
  2. Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia. (PMID: 24603890) Tørring PM … Brusgaard K (PloS one 2014) 74
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01538 Gene

Sources for LINC01538 Gene