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Aliases for LINC01538 Gene
Data sources for LINC01538 Gene:
Subcategory (RNA class) for LINC01538 Gene
lncRNA
Aliases for LINC01538 Gene
- Long Intergenic Non-Protein Coding RNA 1538 (HGNC, NCBI Entrez Gene, Ensembl)
- TCONS_00026184 (HGNC, NCBI Entrez Gene)
- RP11-909B2.1 (HGNC, NCBI Entrez Gene)
- LINC01538 (Ensembl, LNCipedia)
- NONHSAG024067.2 (NONCODE)
- HSALNG0122089 (LncBook)
External Ids for LINC01538 Gene
- HGNC: 51306
- NCBI Entrez Gene: 400654
- Ensembl: ENSG00000266952
Summaries for LINC01538 Gene
GeneCards Summary for LINC01538 Gene
LINC01538 (Long Intergenic Non-Protein Coding RNA 1538) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01538 include Hereditary Hemorrhagic Telangiectasia.
Additional gene information for LINC01538 Gene
- HGNC (51306)
- NCBI Entrez Gene (400654)
- Ensembl (ENSG00000266952)
- Open Targets Platform(ENSG00000266952)
- Search for LINC01538 at DataMed
- Search for LINC01538 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01538 Gene
Genomics for LINC01538 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01538 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18J064260 | Promoter | 0.3 | EPDnew | 250.2 | +66.7 | 66696 | 0.1 | LINC01538 piR-30188-085 MF281438-012 LINC01924 SERPINB8 | ||
| GH18J064271 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 0.2 | +51.9 | 51865 | 7.4 | RXRA FOXA2 ZBTB33 JUND HNF4A RAD21 REST MAX SP1 POU5F1 | piR-30188-085 piR-53338-069 MF281438-012 LINC01538 LINC01924 SERPINB8 | |
| GH18J064287 | Enhancer | 0.5 | ENCODE | 0.3 | +38.2 | 38175 | 1.2 | RXRA HNF4A RAD21 MAX SP1 YY1 HNF4G ATF3 | piR-53338-069 LINC01538 LINC01924 SERPINB8 | |
| GH18J064253 | Enhancer | 0.6 | ENCODE | 0.2 | +72.2 | 72208 | 1.6 | CEBPB RXRA ZBTB33 JUND HNF4A RAD21 REST MAX SP1 YY1 | MF281438-012 piR-30188-085 LINC01538 LINC01924 SERPINB8 | |
| GH18J064365 | Enhancer | 0.4 | Ensembl | 0.3 | -38.9 | -38850 | 0.4 | BATF JUNB ETV6 | LINC01538 piR-48222-164 LINC01924 SERPINB8 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01538 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01538 Gene
Latest Assembly
- chr18:64,181,057-64,326,751
- (GRCh38/hg38)
- Size:
- 145,695 bases
- Orientation:
- Minus strand
Previous Assembly
- chr18:61,880,317-61,927,290
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 46,974 bases
- Orientation:
- Minus strand
- chr18:61,880,317-61,927,290
- (GRCh37/hg19 by Ensembl)
- Size:
- 46,974 bases
- Orientation:
- Minus strand
Genomic View for LINC01538 Gene
Genes around LINC01538 on UCSC Golden Path with GeneCards custom track
LINC01538 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 18q22.1 by HGNC
- 18q22.1 by Entrez Gene
- 18q22.1 by Ensembl
LINC01538 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01538 Gene
Proteins for LINC01538 Gene
Post-translational modifications for LINC01538 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01538 Gene
Domains & Families for LINC01538 Gene
Gene Families for LINC01538 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01538 Gene
Function for LINC01538 Gene
Phenotypes From GWAS Catalog for LINC01538 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01538 Gene
Localization for LINC01538 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01538 Gene
Transcripts for LINC01538 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01538 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00003AAB1B_9606 | lncRNA | 2411 | 3 |
Ensembl: ENST00000588074 (view in UCSC) , LNCipedia: LINC01538:2, NONCODE: NONHSAT059690.2, |
| URS000075C66D_9606 | lncRNA | 2407 | 1 |
RefSeq: NR_033983, |
| URS0000DB7B31_9606 | lncRNA | 1127 | 1 |
Ensembl: ENST00000649058 (view in UCSC) , |
| URS0001BE545E_9606 | lncRNA | 5400 | 1 |
LncBook: HSALNT0252402, |
| URS00008BC473_9606 | lncRNA | 2410 | 1 |
LNCipedia: LINC01538:3, |
LINC01538 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01538 Gene
- 2 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01538 Gene
- GeneLoc Exon Structure for
- LINC01538
Expression for LINC01538 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01538
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01538 Gene
Orthologs for LINC01538 Gene
No data available for Orthologs for LINC01538 Gene
Paralogs for LINC01538 Gene
No data available for Paralogs for LINC01538 Gene
Variants for LINC01538 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv3377n100 | CNV | gain | 25217958 |
| esv21739 | CNV | gain | 19812545 |
| esv2762855 | CNV | gain | 21179565 |
| esv3642789 | CNV | gain | 21293372 |
| nsv1066552 | CNV | gain | 25217958 |
| nsv1067311 | CNV | loss | 25217958 |
Additional Variant Information for LINC01538 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01538
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01538 Gene
Disorders for LINC01538 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| hereditary hemorrhagic telangiectasia |
|
Search LINC01538 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC01538
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01538 Gene
Publications for LINC01538 Gene
- Competing endogenous RNA network crosstalk reveals novel molecular markers in colorectal cancer. (PMID: 29737552) Samir N … El-Asmar F (Journal of cellular biochemistry 2018) 2 3
- Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia. (PMID: 24603890) Tørring PM … Brusgaard K (PloS one 2014) 74
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
Products for LINC01538 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01538
- Origene Custom Protein Services for LINC01538
- Browse OriGene Inhibitory RNA Products For LINC01538
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01538
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01538
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01538
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01538
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01538
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01538
Sources for LINC01538 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB