LINC01538 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1538

GC18M064213
GIFtS:
13

Aliases for LINC01538 Gene

Subcategory (RNA class) for LINC01538 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC01538 Gene

  • Long Intergenic Non-Protein Coding RNA 1538 2 3 5
  • LINC01538 2 168
  • TCONS_00026184 3
  • NONHSAG024067 92
  • RP11-909B2.1 3

External Ids for LINC01538 Gene

Summaries for LINC01538 Gene

GeneCards Summary for LINC01538 Gene

LINC01538 (Long Intergenic Non-Protein Coding RNA 1538) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01538 include Hereditary Hemorrhagic Telangiectasia.

Additional gene information for LINC01538 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01538 Gene

Genomics for LINC01538 Gene

GeneHancer (GH) Regulatory Elements for LINC01538 Gene

Promoters and enhancers for LINC01538 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J064271 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -14.8 -14831 7.4 FOXA2 NR2F2 HDAC2 ZBTB33 TCF12 JUND POLR2A RAD21 RXRA MAX piR-30188-085 piR-53338-069 LINC01538 LINC01924
GH18J064253 Enhancer 0.6 ENCODE 0.4 +5.5 5512 1.6 NR2F2 CEBPB ZBTB33 JUND RAD21 RXRA MAX HNF4A REST YY1 LINC01538 MF281438-012 LINC01924
GH18J064219 Enhancer 0.8 UCNEbase Ensembl CraniofacialAtlas 0.3 +40.4 40354 0.6 POLR2A SMARCA4 KDSR piR-33432-259 LINC01538 piR-38352-279 LINC01924
GH18J064202 Enhancer 0.8 Ensembl ENCODE 0.2 +57.4 57437 2 ARNT NR2C1 IKZF1 NR2F1 TBX21 ATF7 SMAD1 CEBPB ZNF687 MTA2 KDSR piR-33432-259 piR-38352-279 LINC01538 LINC01924
GH18J064244 Enhancer 0.4 Ensembl 0.4 +15.2 15155 0.6 USF1 CTCF RAD21 MAX MF281438-012 LINC01538 LINC01924
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01538 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01538 Gene

Genomic Locations for LINC01538 Gene
chr18:64,181,314-64,260,055
(GRCh38/hg38)
Size:
78,742 bases
Orientation:
Minus strand
chr18:61,880,317-61,927,290
(GRCh37/hg19)
Size:
46,974 bases
Orientation:
Minus strand

Genomic View for LINC01538 Gene

Genes around LINC01538 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01538 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01538 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01538 Gene

Proteins for LINC01538 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01538 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01538 Gene

Domains & Families for LINC01538 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01538 Gene

Function for LINC01538 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01538 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01538 Gene

Localization for LINC01538 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01538 Gene

Pathways & Interactions for LINC01538 Gene

PathCards logo

SuperPathways for LINC01538 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01538 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01538 Gene

Drugs & Compounds for LINC01538 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01538 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01538 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01538 Gene

No ASD Table

Relevant External Links for LINC01538 Gene

GeneLoc Exon Structure for
LINC01538

Expression for LINC01538 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01538 Gene

mRNA expression in normal human tissues for LINC01538 Gene
mRNA expression by GTEx for LINC01538 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01538

genes like me logo Genes that share expression patterns with LINC01538: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01538 Gene

Orthologs for LINC01538 Gene

Evolution for LINC01538 Gene

ENSEMBL:
Gene Tree for LINC01538 (if available)
TreeFam:
Gene Tree for LINC01538 (if available)

No data available for Orthologs for LINC01538 Gene

Paralogs for LINC01538 Gene

No data available for Paralogs for LINC01538 Gene

Variants for LINC01538 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01538 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01538 Gene

Variant ID Type Subtype PubMed ID
dgv3377n100 CNV gain 25217958
esv21739 CNV gain 19812545
esv2762855 CNV gain 21179565
esv3642789 CNV gain 21293372
nsv1066552 CNV gain 25217958
nsv1067311 CNV loss 25217958

Additional Variant Information for LINC01538 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01538

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01538 Gene

Disorders for LINC01538 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01538 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hereditary hemorrhagic telangiectasia
  • hht
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01538

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with LINC01538: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01538 Gene

Publications for LINC01538 Gene

  1. Competing endogenous RNA network crosstalk reveals novel molecular markers in colorectal cancer. (PMID: 29737552) Samir N … El-Asmar F (Journal of cellular biochemistry 2018) 2 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

ExternalLinks

View latest publications for LINC01538 gene in Mastermind

Products for LINC01538 Gene

Sources for LINC01538 Gene