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LINC01538 (Long Intergenic Non-Protein Coding RNA 1538) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01538 include Hereditary Hemorrhagic Telangiectasia.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH18J064260 | Promoter | 0.3 | EPDnew | 250.2 | +66.7 | 66696 | 0.1 | LINC01538 piR-30188-085 MF281438-012 LINC01924 SERPINB8 | ||
GH18J064271 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 0.2 | +51.9 | 51865 | 7.4 | RXRA FOXA2 ZBTB33 JUND HNF4A RAD21 REST MAX SP1 POU5F1 | piR-30188-085 piR-53338-069 MF281438-012 LINC01538 LINC01924 SERPINB8 | |
GH18J064287 | Enhancer | 0.5 | ENCODE | 0.3 | +38.2 | 38175 | 1.2 | RXRA HNF4A RAD21 MAX SP1 YY1 HNF4G ATF3 | piR-53338-069 LINC01538 LINC01924 SERPINB8 | |
GH18J064253 | Enhancer | 0.6 | ENCODE | 0.2 | +72.2 | 72208 | 1.6 | CEBPB RXRA ZBTB33 JUND HNF4A RAD21 REST MAX SP1 YY1 | MF281438-012 piR-30188-085 LINC01538 LINC01924 SERPINB8 | |
GH18J064365 | Enhancer | 0.4 | Ensembl | 0.3 | -38.9 | -38850 | 0.4 | BATF JUNB ETV6 | LINC01538 piR-48222-164 LINC01924 SERPINB8 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS00003AAB1B_9606 | lncRNA | 2411 | 3 |
Ensembl: ENST00000588074 (view in UCSC) , LNCipedia: LINC01538:2, NONCODE: NONHSAT059690.2, |
URS000075C66D_9606 | lncRNA | 2407 | 1 |
RefSeq: NR_033983, |
URS0000DB7B31_9606 | lncRNA | 1127 | 1 |
Ensembl: ENST00000649058 (view in UCSC) , |
URS0001BE545E_9606 | lncRNA | 5400 | 1 |
LncBook: HSALNT0252402, |
URS00008BC473_9606 | lncRNA | 2410 | 1 |
LNCipedia: LINC01538:3, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv3377n100 | CNV | gain | 25217958 |
esv21739 | CNV | gain | 19812545 |
esv2762855 | CNV | gain | 21179565 |
esv3642789 | CNV | gain | 21293372 |
nsv1066552 | CNV | gain | 25217958 |
nsv1067311 | CNV | loss | 25217958 |
Disorder | Aliases | PubMed IDs |
---|---|---|
hereditary hemorrhagic telangiectasia |
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