Aliases for LINC01535 Gene

Subcategory (RNA class) for LINC01535 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01535 Gene

  • Long Intergenic Non-Protein Coding RNA 1535 2 3 5
  • LINC01535 2 5 165
  • NONHSAG025683.2 91
  • HSALNG0125829 164

External Ids for LINC01535 Gene

Summaries for LINC01535 Gene

GeneCards Summary for LINC01535 Gene

LINC01535 (Long Intergenic Non-Protein Coding RNA 1535) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01535 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01535 Gene

Genomics for LINC01535 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01535 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01535 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01535 Gene

Genomic Locations for LINC01535 Gene
chr19:37,251,885-37,530,157
(GRCh38/hg38)
Size:
278,273 bases
Orientation:
Plus strand
chr19:37,742,814-37,756,437
(GRCh37/hg19)
Size:
13,624 bases
Orientation:
Plus strand

Genomic View for LINC01535 Gene

Genes around LINC01535 on UCSC Golden Path with GeneCards custom track
LINC01535 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01535 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01535 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01535 Gene

Proteins for LINC01535 Gene

Post-translational modifications for LINC01535 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01535 Gene

Domains & Families for LINC01535 Gene

Gene Families for LINC01535 Gene

genes like me logo Genes that share domains with LINC01535: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01535 Gene

Function for LINC01535 Gene

Phenotypes From GWAS Catalog for LINC01535 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01535 Gene

Localization for LINC01535 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01535 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01535 Gene

Pathways & Interactions for LINC01535 Gene

PathCards logo

SuperPathways for LINC01535 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01535 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01535 Gene

Drugs & Compounds for LINC01535 Gene

No Compound Related Data Available

Transcripts for LINC01535 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01535 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000029E612_9606 lncRNA 1699 4

Ensembl: ENST00000592712 (view in UCSC) ,

LncBook: HSALNT0259395,

LNCipedia: LINC01535:8,

NONCODE: NONHSAT066082.2,

URS0000342B54_9606 lncRNA 815 4

Ensembl: ENST00000591116 (view in UCSC) ,

LncBook: HSALNT0259393,

LNCipedia: LINC01535:6,

NONCODE: NONHSAT066081.2,

URS00000CA18E_9606 lncRNA 553 4

Ensembl: ENST00000438770 (view in UCSC) ,

LncBook: HSALNT0259392,

LNCipedia: LINC01535:5,

NONCODE: NONHSAT066080.2,

URS0000433C55_9606 lncRNA 390 4

Ensembl: ENST00000592100 (view in UCSC) ,

LncBook: HSALNT0259401,

LNCipedia: LINC01535:11,

NONCODE: NONHSAT066085.2,

URS000075D272_9606 lncRNA 1740 3

RefSeq: NR_110718,

LncBook: HSALNT0259377,

LNCipedia: LINC01535:3,

LINC01535 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01535 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01535 Gene

No ASD Table

Relevant External Links for LINC01535 Gene

GeneLoc Exon Structure for
LINC01535

Expression for LINC01535 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01535 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01535

genes like me logo Genes that share expression patterns with LINC01535: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01535 Gene

Orthologs for LINC01535 Gene

Evolution for LINC01535 Gene

ENSEMBL:
Gene Tree for LINC01535 (if available)
TreeFam:
Gene Tree for LINC01535 (if available)

No data available for Orthologs for LINC01535 Gene

Paralogs for LINC01535 Gene

No data available for Paralogs for LINC01535 Gene

Variants for LINC01535 Gene

Additional dbSNP identifiers (rs#s) for LINC01535 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01535 Gene

Variant ID Type Subtype PubMed ID
esv2718515 CNV deletion 23290073
nsv509741 CNV insertion 20534489
nsv579461 CNV gain 21841781
nsv821351 CNV deletion 20802225
nsv9717 CNV gain+loss 18304495
nsv978811 CNV duplication 23825009

Additional Variant Information for LINC01535 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01535

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01535 Gene

Disorders for LINC01535 Gene

No disorders were found for LINC01535 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01535 Gene

Publications for LINC01535 Gene

  1. Long non-coding RNA LINC01535 promotes cervical cancer progression via targeting the miR-214/EZH2 feedback loop. (PMID: 31273925) Song H … Li G (Journal of cellular and molecular medicine 2019) 2 3
  2. Genetics of coronary artery calcification among African Americans, a meta-analysis. (PMID: 23870195) Wojczynski MK … Reilly MP (BMC medical genetics 2013) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for LINC01535 Gene

Sources for LINC01535 Gene