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Aliases for LINC01535 Gene

Subcategory (RNA class) for LINC01535 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01535 Gene

  • Long Intergenic Non-Protein Coding RNA 1535 2 3 5

External Ids for LINC01535 Gene

Summaries for LINC01535 Gene

GeneCards Summary for LINC01535 Gene

LINC01535 (Long Intergenic Non-Protein Coding RNA 1535) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01535 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01535 Gene

Genomics for LINC01535 Gene

GeneHancer (GH) Regulatory Elements for LINC01535 Gene

Promoters and enhancers for LINC01535 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J037251 Promoter/Enhancer 1.4 Ensembl ENCODE 660.8 +0.1 116 1.6 PKNOX1 ZNF2 YY1 ZNF416 FOS SP3 CEBPZ YY2 REST ZNF623 LINC01535 ZNF383 ZNF345 ZNF850 ZNF567 ZNF573 HKR1 ZNF527 ZNF585B ZNF790-AS1
GH19J037593 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 69.9 +342.8 342816 2.2 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 SLC30A9 ZNF213 ZNF571 ZNF540 ZNF567 ZNF527 ZNF345 ZNF383 HKR1 ZFP30 ZNF850 ZNF607
GH19J037778 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 63.8 +527.6 527578 2.3 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 YY1 POLR2B ZNF766 ZNF573 LOC728533 ZNF345 ZNF383 ZFP30 ZNF527 ZNF585B ZNF571 HKR1 ZNF793
GH19J037653 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 60.8 +403.4 403415 3 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF416 ZNF143 ZNF548 SP3 ZNF571 ZFP30 ZNF567 ZNF345 ZNF527 ZNF383 HKR1 ZNF850 ZNF790 ZNF607
GH19J037316 Promoter/Enhancer 1.5 Ensembl ENCODE 64.1 +66.0 65970 2.7 PKNOX1 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF416 ZNF207 LINC01535 ZNF383 ZNF345 ZNF573 ZNF567 ZNF850 ZNF793 HKR1 ZNF529 ZFP82
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01535 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01535 Gene

Genomic Locations for LINC01535 Gene
chr19:37,251,885-37,265,535
(GRCh38/hg38)
Size:
13,651 bases
Orientation:
Plus strand
chr19:37,742,814-37,756,437
(GRCh37/hg19)
Size:
13,624 bases
Orientation:
Plus strand

Genomic View for LINC01535 Gene

Genes around LINC01535 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01535 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01535 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01535 Gene

Proteins for LINC01535 Gene

Post-translational modifications for LINC01535 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01535 Gene

Domains & Families for LINC01535 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01535 Gene

Function for LINC01535 Gene

Phenotypes From GWAS Catalog for LINC01535 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01535 Gene

Localization for LINC01535 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01535 Gene

Pathways & Interactions for LINC01535 Gene

SuperPathways for LINC01535 Gene

No Data Available

Interacting Proteins for LINC01535 Gene

Gene Ontology (GO) - Biological Process for LINC01535 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01535 Gene

Drugs & Compounds for LINC01535 Gene

No Compound Related Data Available

Transcripts for LINC01535 Gene

mRNA/cDNA for LINC01535 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(9) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01535 Gene

No ASD Table

Relevant External Links for LINC01535 Gene

GeneLoc Exon Structure for
LINC01535
ECgene alternative splicing isoforms for
LINC01535

Expression for LINC01535 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01535 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01535 Gene:

LINC01535
genes like me logo Genes that share expression patterns with LINC01535: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01535 Gene

Orthologs for LINC01535 Gene

Evolution for LINC01535 Gene

ENSEMBL:
Gene Tree for LINC01535 (if available)
TreeFam:
Gene Tree for LINC01535 (if available)

No data available for Orthologs for LINC01535 Gene

Paralogs for LINC01535 Gene

No data available for Paralogs for LINC01535 Gene

Variants for LINC01535 Gene

Sequence variations from dbSNP and Humsavar for LINC01535 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000047596 -- 37,263,055(+) T/C intron_variant
rs1000120696 -- 37,264,709(+) T/A genic_downstream_transcript_variant, intron_variant
rs1000787855 -- 37,252,162(+) C/T non_coding_transcript_variant
rs1000838406 -- 37,252,429(+) G/A intron_variant
rs1000966640 -- 37,250,392(+) TT/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01535 Gene

Variant ID Type Subtype PubMed ID
esv2718515 CNV deletion 23290073
nsv509741 CNV insertion 20534489
nsv579461 CNV gain 21841781
nsv821351 CNV deletion 20802225
nsv9717 CNV gain+loss 18304495
nsv978811 CNV duplication 23825009

Additional Variant Information for LINC01535 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01535

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01535 Gene

Disorders for LINC01535 Gene

Additional Disease Information for LINC01535

No disorders were found for LINC01535 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01535 Gene

Publications for LINC01535 Gene

  1. Genetics of coronary artery calcification among African Americans, a meta-analysis. (PMID: 23870195) Wojczynski MK … Reilly MP (BMC medical genetics 2013) 3 58

Products for LINC01535 Gene

Sources for LINC01535 Gene

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