Aliases for LINC01533 Gene

Subcategory (RNA class) for LINC01533 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01533 Gene

  • Long Intergenic Non-Protein Coding RNA 1533 2 3 5
  • LINC01533 2 5 165
  • NONHSAG025450.2 91
  • NONHSAG025448.2 91
  • HSALNG0125353 164
  • HSALNG0125351 164
  • Lnc-ZNF507-3 165
  • CTC-360P9.3 3

External Ids for LINC01533 Gene

Summaries for LINC01533 Gene

GeneCards Summary for LINC01533 Gene

LINC01533 (Long Intergenic Non-Protein Coding RNA 1533) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01533 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01533 Gene

Genomics for LINC01533 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01533 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J032017 Enhancer 0.8 Ensembl ENCODE 0.4 -7.7 -7730 1.6 CREB1 PRDM10 ZNF629 ZBTB10 CEBPB ZBTB48 ZBTB17 ATF2 ZFHX2 ZNF777 LINC01533 piR-37698-002 LINC01837 ZNF507 THEG5
GH19J032035 Enhancer 0.7 UCNEbase Ensembl 0.4 +10.4 10371 0.6 ZNF316 MAFF MAFK LINC01533 LINC01837 ZNF507 THEG5
GH19J032038 Enhancer 0.7 UCNEbase Ensembl ENCODE 0.4 +13.6 13633 1.7 LINC01533 LINC01837 ZNF507 THEG5
GH19J032012 Enhancer 0.6 Ensembl 0.4 -12.7 -12729 1.2 ZIC2 CEBPA SOX13 CEBPB TCF7 SMAD4 NFIL3 GLIS1 SOX5 HLF piR-37698-002 LINC01533 LINC01837 ZNF507 THEG5
GH19J032030 Enhancer 0.4 UCNEbase 0.4 +5.1 5134 0.3 GATA2 LINC01533 LINC01837 ZNF507 THEG5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01533 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01533 Gene

Genomic Locations for LINC01533 Gene
chr19:32,025,730-32,074,101
(GRCh38/hg38)
Size:
48,372 bases
Orientation:
Plus strand
chr19:32,516,768-32,547,771
(GRCh37/hg19)
Size:
31,004 bases
Orientation:
Plus strand

Genomic View for LINC01533 Gene

Genes around LINC01533 on UCSC Golden Path with GeneCards custom track
LINC01533 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01533 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01533 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01533 Gene

Proteins for LINC01533 Gene

Post-translational modifications for LINC01533 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01533 Gene

Domains & Families for LINC01533 Gene

Gene Families for LINC01533 Gene

genes like me logo Genes that share domains with LINC01533: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01533 Gene

Function for LINC01533 Gene

Phenotypes From GWAS Catalog for LINC01533 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01533 Gene

Localization for LINC01533 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01533 Gene

Pathways & Interactions for LINC01533 Gene

PathCards logo

SuperPathways for LINC01533 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01533 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01533 Gene

Drugs & Compounds for LINC01533 Gene

No Compound Related Data Available

Transcripts for LINC01533 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01533 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000055CFA6_9606 lncRNA 491 4

Ensembl: ENST00000589110 (view in UCSC) ,

LncBook: HSALNT0258432,

LNCipedia: LINC01533:17,

NONCODE: NONHSAT064173.2,

URS000075A5AA_9606 lncRNA 819 3

HGNC: 51274,

RefSeq: NR_110673,

LNCipedia: LINC01533:18,

URS000075DABE_9606 lncRNA 752 3

RefSeq: NR_110675,

LncBook: HSALNT0258415,

LNCipedia: LINC01533:8,

URS0000254F35_9606 lncRNA 616 3

Ensembl: ENST00000585739 (view in UCSC) ,

LNCipedia: LINC01533:14,

NONCODE: NONHSAT064170.2,

URS000075D492_9606 lncRNA 663 2

RefSeq: NR_110674,

LNCipedia: LINC01533:19,

LINC01533 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01533 Gene

4 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01533 Gene

No ASD Table

Relevant External Links for LINC01533 Gene

GeneLoc Exon Structure for
LINC01533

Expression for LINC01533 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01533 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01533

genes like me logo Genes that share expression patterns with LINC01533: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01533 Gene

Orthologs for LINC01533 Gene

Evolution for LINC01533 Gene

ENSEMBL:
Gene Tree for LINC01533 (if available)
TreeFam:
Gene Tree for LINC01533 (if available)

No data available for Orthologs for LINC01533 Gene

Paralogs for LINC01533 Gene

No data available for Paralogs for LINC01533 Gene

Variants for LINC01533 Gene

Additional dbSNP identifiers (rs#s) for LINC01533 Gene

Additional Variant Information for LINC01533 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01533

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01533 Gene

Disorders for LINC01533 Gene

Additional Disease Information for LINC01533

No disorders were found for LINC01533 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01533 Gene

Publications for LINC01533 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC01533 Gene

Products for LINC01533 Gene

Sources for LINC01533 Gene