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Aliases for LINC01533 Gene

Subcategory (RNA class) for LINC01533 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01533 Gene

  • Long Intergenic Non-Protein Coding RNA 1533 2 3 5
  • CTC-360P9.3 3

External Ids for LINC01533 Gene

Summaries for LINC01533 Gene

GeneCards Summary for LINC01533 Gene

LINC01533 (Long Intergenic Non-Protein Coding RNA 1533) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01533 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01533 Gene

Genomics for LINC01533 Gene

GeneHancer (GH) Regulatory Elements for LINC01533 Gene

Promoters and enhancers for LINC01533 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J031347 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 14.6 -675.5 -675533 5.5 PKNOX1 SIN3A ZNF2 GLIS2 KLF7 KLF13 ZNF202 ZNF263 SP3 REST TSHZ3 ENSG00000267662 ZNF507 LOC105372360 THEG5 ENSG00000267012 LINC01533 ENSG00000278875
GH19J032343 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.6 +319.5 319466 4.4 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 ZNF766 ZNF507 GPATCH1 CEP89 FAAP24 PDCD5 DPY19L3 LINC01533 ENSG00000267012 THEG5 LOC105372360
GH19J032674 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 14.6 +649.5 649536 2.5 HDGF PKNOX1 CLOCK ARID4B SIN3A ZNF2 YY1 ZNF213 ZNF416 ZNF143 ANKRD27 RGS9BP PIR59221 GC19P032775 GPATCH1 ZNF507 CEP89 LINC01533 AKR1B1P7 ENSG00000267012
GH19J032691 Promoter/Enhancer 1.6 Ensembl ENCODE 14.6 +666.4 666357 3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 POLR2B ZNF213 ENSG00000267475 PIR51776 PIR48211 CEP89 GPATCH1 ZNF507 NUDT19 FAAP24 ENSG00000267012 LINC01533
GH19J031311 Enhancer 1 Ensembl ENCODE 14.6 -713.5 -713479 0.8 PKNOX1 INSM2 MZF1 ZNF2 ZNF121 ZNF213 ZNF366 ZSCAN5C SCRT2 FOS LOC105372360 THEG5 ENSG00000267012 LINC01533 GC19M031336 TSHZ3 GC19M031249
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01533 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01533 Gene

Genomic Locations for LINC01533 Gene
chr19:32,025,862-32,056,865
(GRCh38/hg38)
Size:
31,004 bases
Orientation:
Plus strand
chr19:32,516,768-32,547,771
(GRCh37/hg19)
Size:
31,004 bases
Orientation:
Plus strand

Genomic View for LINC01533 Gene

Genes around LINC01533 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01533 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01533 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01533 Gene

Proteins for LINC01533 Gene

Post-translational modifications for LINC01533 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01533 Gene

Domains & Families for LINC01533 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01533 Gene

Function for LINC01533 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01533 Gene

Localization for LINC01533 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01533 Gene

Pathways & Interactions for LINC01533 Gene

SuperPathways for LINC01533 Gene

No Data Available

Interacting Proteins for LINC01533 Gene

Gene Ontology (GO) - Biological Process for LINC01533 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01533 Gene

Drugs & Compounds for LINC01533 Gene

No Compound Related Data Available

Transcripts for LINC01533 Gene

mRNA/cDNA for LINC01533 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01533 Gene

No ASD Table

Relevant External Links for LINC01533 Gene

GeneLoc Exon Structure for
LINC01533
ECgene alternative splicing isoforms for
LINC01533

Expression for LINC01533 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01533 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01533 Gene:

LINC01533
genes like me logo Genes that share expression patterns with LINC01533: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01533 Gene

Orthologs for LINC01533 Gene

Evolution for LINC01533 Gene

ENSEMBL:
Gene Tree for LINC01533 (if available)
TreeFam:
Gene Tree for LINC01533 (if available)

No data available for Orthologs for LINC01533 Gene

Paralogs for LINC01533 Gene

No data available for Paralogs for LINC01533 Gene

Variants for LINC01533 Gene

Sequence variations from dbSNP and Humsavar for LINC01533 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000245386 -- 32,028,880(+) A/G intron_variant
rs1000297798 -- 32,028,577(+) C/T intron_variant
rs1000370491 -- 32,024,796(+) G/A upstream_transcript_variant
rs1000446127 -- 32,033,841(+) G/A intron_variant
rs1000522192 -- 32,047,230(+) C/T genic_downstream_transcript_variant, intron_variant

Additional Variant Information for LINC01533 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01533

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01533 Gene

Disorders for LINC01533 Gene

Additional Disease Information for LINC01533

No disorders were found for LINC01533 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01533 Gene

Publications for LINC01533 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01533 Gene

Sources for LINC01533 Gene

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