Aliases for LINC01532 Gene

Subcategory (RNA class) for LINC01532 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01532 Gene

  • Long Intergenic Non-Protein Coding RNA 1532 2 3 5
  • LINC01532 2 5 165
  • NONHSAG025402.2 91
  • CTD-2081K17.2 3
  • HSALNG0125177 164

External Ids for LINC01532 Gene

Summaries for LINC01532 Gene

GeneCards Summary for LINC01532 Gene

LINC01532 (Long Intergenic Non-Protein Coding RNA 1532) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01532 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01532 Gene

Genomics for LINC01532 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01532 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J029005 Promoter 0.5 EPDnew 600.7 +0.2 218 0.1 ZFHX2 EGR2 LINC01532 RNA5SP470 HSALNG0125179 UQCRFS1
GH19J029003 Enhancer 0.5 Ensembl 600.7 +1.6 1581 1.4 ZIC2 ZNF623 ZNF514 ZC3H11A ZNF781 ZNF697 PRDM12 LINC01532 RPL9P32 HSALNG0125179 UQCRFS1
GH19J029002 Enhancer 0.4 Ensembl 600.7 -0.2 -218 0.6 KDM1A ZFHX2 EGR2 LINC01532 RNA5SP470 UQCRFS1
GH19J029001 Enhancer 0.3 Ensembl 600.7 -0.9 -918 0.4 KDM1A LINC01532 RNA5SP470 LOC107985335 UQCRFS1
GH19J029004 Enhancer 0.2 Ensembl 600.7 +0.4 382 0.2 LINC01532 RNA5SP470 HSALNG0125179 UQCRFS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01532 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01532 Gene

Genomic Locations for LINC01532 Gene
chr19:29,002,319-29,015,160
(GRCh38/hg38)
Size:
12,842 bases
Orientation:
Plus strand
chr19:29,493,462-29,504,862
(GRCh37/hg19)
Size:
11,401 bases
Orientation:
Plus strand

Genomic View for LINC01532 Gene

Genes around LINC01532 on UCSC Golden Path with GeneCards custom track
LINC01532 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01532 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01532 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01532 Gene

Proteins for LINC01532 Gene

Post-translational modifications for LINC01532 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01532 Gene

Domains & Families for LINC01532 Gene

Gene Families for LINC01532 Gene

genes like me logo Genes that share domains with LINC01532: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01532 Gene

Function for LINC01532 Gene

Phenotypes From GWAS Catalog for LINC01532 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01532 Gene

Localization for LINC01532 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01532 Gene

Pathways & Interactions for LINC01532 Gene

PathCards logo

SuperPathways for LINC01532 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01532 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01532 Gene

Drugs & Compounds for LINC01532 Gene

No Compound Related Data Available

Transcripts for LINC01532 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01532 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000293941_9606 lncRNA 1948 5

HGNC: 51272,

RefSeq: NR_040036,

LncBook: HSALNT0258040,

LNCipedia: LINC01532:2,

NONCODE: NONHSAT064084.2,

URS0000215B8A_9606 lncRNA 491 4

Ensembl: ENST00000589821 (view in UCSC) ,

LncBook: HSALNT0258046,

LNCipedia: LINC01532:4,

NONCODE: NONHSAT064085.2,

URS0000EEFE65_9606 lncRNA 3336 1

Ensembl: ENST00000591143 (view in UCSC) ,

URS0000EF3FBC_9606 lncRNA 2976 1

Ensembl: ENST00000656059 (view in UCSC) ,

URS0000EF2CA2_9606 lncRNA 1840 1

Ensembl: ENST00000663054 (view in UCSC) ,

LINC01532 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01532 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01532 Gene

No ASD Table

Relevant External Links for LINC01532 Gene

GeneLoc Exon Structure for
LINC01532

Expression for LINC01532 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01532 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01532

genes like me logo Genes that share expression patterns with LINC01532: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01532 Gene

Orthologs for LINC01532 Gene

Evolution for LINC01532 Gene

ENSEMBL:
Gene Tree for LINC01532 (if available)
TreeFam:
Gene Tree for LINC01532 (if available)

No data available for Orthologs for LINC01532 Gene

Paralogs for LINC01532 Gene

No data available for Paralogs for LINC01532 Gene

Variants for LINC01532 Gene

Additional dbSNP identifiers (rs#s) for LINC01532 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01532 Gene

Variant ID Type Subtype PubMed ID
dgv1760n106 CNV tandem duplication 24896259
esv1159408 CNV insertion 17803354
esv2519556 CNV insertion 19546169
esv26883 CNV loss 19812545
esv2758753 CNV loss 17122850
nsv1059473 CNV gain 25217958
nsv1061604 CNV loss 25217958

Additional Variant Information for LINC01532 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01532

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01532 Gene

Disorders for LINC01532 Gene

No disorders were found for LINC01532 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01532 Gene

Publications for LINC01532 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01532 Gene

Products for LINC01532 Gene

Sources for LINC01532 Gene