Aliases for LINC01530 Gene

Data sources for LINC01530 Gene:

Subcategory (RNA class) for LINC01530 Gene

lncRNA

Aliases for LINC01530 Gene

External Ids for LINC01530 Gene

Summaries for LINC01530 Gene

GeneCards Summary for LINC01530 Gene

LINC01530 (Long Intergenic Non-Protein Coding RNA 1530) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01530 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01530 Gene

Genomics for LINC01530 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01530 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J051593 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 250.7 +0.2 179 2.4 TBP SP1 SIX5 NR2C1 MNT IKZF1 ETS1 IRF2 MBD2 ZNF217 ENSG00000269388 LINC01530 SHANK1 SYT3 IGLON5 ZNF175 C19orf81 ENSG00000267808 SIGLEC14 SIGLEC12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01530 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01530 Gene

Latest Assembly
chr19:51,591,782-51,594,380
(GRCh38/hg38)
Size:
2,599 bases
Orientation:
Minus strand

Previous Assembly
chr19:52,095,036-52,097,633
(GRCh37/hg19 by Entrez Gene)
Size:
2,598 bases
Orientation:
Minus strand

Genomic View for LINC01530 Gene

Genes around LINC01530 on UCSC Golden Path with GeneCards custom track
LINC01530 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01530 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01530 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01530 Gene

Proteins for LINC01530 Gene

Post-translational modifications for LINC01530 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01530 Gene

Domains & Families for LINC01530 Gene

Gene Families for LINC01530 Gene

genes like me logo Genes that share domains with LINC01530: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01530 Gene

Function for LINC01530 Gene

Phenotypes for LINC01530 Gene

genes like me logo Genes that share phenotypes with LINC01530: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01530 Gene

Localization for LINC01530 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01530 Gene

Pathways & Interactions for LINC01530 Gene

PathCards logo

SuperPathways for LINC01530 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01530 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01530 Gene

Drugs & Compounds for LINC01530 Gene

No Compound Related Data Available

Transcripts for LINC01530 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01530 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DB50_9606 lncRNA 1701 2

RefSeq: NR_034159,

LNCipedia: LINC01530:1,

LINC01530 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01530 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01530 Gene

No ASD Table

Relevant External Links for LINC01530 Gene

GeneLoc Exon Structure for
LINC01530

Expression for LINC01530 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01530

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01530 Gene

Orthologs for LINC01530 Gene

No data available for Orthologs and Evolution for LINC01530 Gene

Paralogs for LINC01530 Gene

No data available for Paralogs for LINC01530 Gene

Variants for LINC01530 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01530 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01530 Gene

Variant ID Type Subtype PubMed ID
esv2758767 CNV gain+loss 17122850
nsv1140251 OTHER inversion 24896259
nsv469584 CNV loss 16826518
nsv579966 CNV loss 21841781
nsv9740 CNV gain+loss 18304495

Additional Variant Information for LINC01530 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01530

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01530 Gene

Disorders for LINC01530 Gene

Additional Disease Information for LINC01530

No disorders were found for LINC01530 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01530 Gene

Publications for LINC01530 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01530 Gene

Sources for LINC01530 Gene