Aliases for LINC01529 Gene

Subcategory (RNA class) for LINC01529 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01529 Gene

  • Long Intergenic Non-Protein Coding RNA 1529 2 3 5
  • LINC01529 2 5
  • NONHSAG025613.2 91
  • HSALNG0125673 164
  • Lnc-PRODH2-5 165

External Ids for LINC01529 Gene

Previous GeneCards Identifiers for LINC01529 Gene

  • GC19M035788
  • GC19M038994
  • GC19M039132
  • GC19M039197
  • GC19M041411
  • GC19M036807
  • GC19M037407
  • GC19M037737
  • GC19M038032
  • GC19M038330
  • GC19M038625
  • GC19M038865

Summaries for LINC01529 Gene

GeneCards Summary for LINC01529 Gene

LINC01529 (Long Intergenic Non-Protein Coding RNA 1529) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01529 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01529 Gene

Genomics for LINC01529 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01529 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J035797 Promoter/Enhancer 1 Ensembl ENCODE 610.3 +0.4 408 1 TFE3 EZH2 NRF1 MGA USF1 TFDP1 FOSL2 POLR2A THAP11 ZBTB33 LINC01529 lnc-PRODH2-3 PRODH2 ARHGAP33
GH19J035710 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 +82.7 82716 10 ZNF221 SP1 GATAD2A CTCF PRDM10 ZNF629 REST SIX5 IKZF1 POLR2A KMT2B ZBTB32 piR-58642 ZNF529 ZNF567 ZNF461 TMEM147-AS1 ZNF599 ZFP82 ZNF566
GH19J035766 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.7 +30.1 30058 2.5 RXRB POLR2A ZNF600 KLF9 SP2 ZBTB10 ZNF316 MAFF MAFK MAFG ARHGAP33 PRODH2 LINC01529 KIRREL2 NPHS1 UPK1A ENSG00000267049 piR-48759-157 PROSER3
GH19J035672 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 8.5 +124.4 124449 1.5 CREB1 PRDM10 ZNF629 KDM1A PRDM1 PATZ1 IKZF2 ZNF561 KLF9 ZBTB20 UPK1A-AS1 UPK1A LINC01529 RF00017-2946 ZBTB32
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01529 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01529 Gene

Genomic Locations for LINC01529 Gene
chr19:35,785,697-35,797,909
(GRCh38/hg38)
Size:
12,213 bases
Orientation:
Minus strand
chr19:36,279,778-36,288,787
(GRCh37/hg19)
Size:
9,010 bases
Orientation:
Minus strand

Genomic View for LINC01529 Gene

Genes around LINC01529 on UCSC Golden Path with GeneCards custom track
LINC01529 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01529 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01529 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01529 Gene

Proteins for LINC01529 Gene

Post-translational modifications for LINC01529 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01529 Gene

Domains & Families for LINC01529 Gene

Gene Families for LINC01529 Gene

genes like me logo Genes that share domains with LINC01529: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01529 Gene

Function for LINC01529 Gene

Phenotypes From GWAS Catalog for LINC01529 Gene

Phenotypes for LINC01529 Gene

GenomeRNAi human phenotypes for LINC01529:
genes like me logo Genes that share phenotypes with LINC01529: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01529 Gene

Localization for LINC01529 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01529 Gene

Pathways & Interactions for LINC01529 Gene

PathCards logo

SuperPathways for LINC01529 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01529 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01529 Gene

Drugs & Compounds for LINC01529 Gene

No Compound Related Data Available

Transcripts for LINC01529 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01529 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EC32_9606 lncRNA 2191 4

HGNC: 51268,

RefSeq: NR_104176,

LncBook: HSALNT0259003,

LNCipedia: lnc-PRODH2-5:1,

URS00001CC008_9606 lncRNA 2167 3

LncBook: HSALNT0259004,

LNCipedia: lnc-PRODH2-5:5,

NONCODE: NONHSAT065921.2,

URS000055FDF4_9606 lncRNA 844 3

LncBook: HSALNT0259006,

LNCipedia: lnc-PRODH2-5:7,

NONCODE: NONHSAT065922.2,

URS000027A757_9606 lncRNA 552 3

LncBook: HSALNT0259009,

LNCipedia: lnc-PRODH2-5:6,

NONCODE: NONHSAT065923.2,

URS0000D56EB3_9606 lncRNA 2184 2

LncBook: HSALNT0259005,

LNCipedia: lnc-PRODH2-5:2,

LINC01529 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01529 Gene

2 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01529 Gene

No ASD Table

Relevant External Links for LINC01529 Gene

GeneLoc Exon Structure for
LINC01529

Expression for LINC01529 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01529 Gene

genes like me logo Genes that share expression patterns with LINC01529: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01529 Gene

Orthologs for LINC01529 Gene

Evolution for LINC01529 Gene

ENSEMBL:
Gene Tree for LINC01529 (if available)
TreeFam:
Gene Tree for LINC01529 (if available)

No data available for Orthologs for LINC01529 Gene

Paralogs for LINC01529 Gene

No data available for Paralogs for LINC01529 Gene

Variants for LINC01529 Gene

Additional dbSNP identifiers (rs#s) for LINC01529 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01529 Gene

Variant ID Type Subtype PubMed ID
esv2669665 CNV deletion 23128226
nsv1138699 CNV deletion 24896259
nsv579423 CNV loss 21841781
nsv953286 CNV deletion 24416366

Additional Variant Information for LINC01529 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01529

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01529 Gene

Disorders for LINC01529 Gene

Additional Disease Information for LINC01529

No disorders were found for LINC01529 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01529 Gene

Publications for LINC01529 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC01529 Gene

Products for LINC01529 Gene

Sources for LINC01529 Gene