Aliases for LINC01525 Gene

Subcategory (RNA class) for LINC01525 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01525 Gene

  • Long Intergenic Non-Protein Coding RNA 1525 2 3 5
  • LINC01525 2 168
  • NONHSAG002549 92
  • HSALNG0006378 167
  • Lnc-MAN1A2-1 3

External Ids for LINC01525 Gene

Previous GeneCards Identifiers for LINC01525 Gene

  • GC01P117296

Summaries for LINC01525 Gene

GeneCards Summary for LINC01525 Gene

LINC01525 (Long Intergenic Non-Protein Coding RNA 1525) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01525 include Tongue Squamous Cell Carcinoma.

Additional gene information for LINC01525 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01525 Gene

Genomics for LINC01525 Gene

GeneHancer (GH) Regulatory Elements for LINC01525 Gene

Promoters and enhancers for LINC01525 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J117362 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas 5.2 +95.0 95015 10 HNRNPK ZBTB40 ZNF217 EP300 SIN3A NRF1 POLR2G SP1 GTF2E2 PHF8 MAN1A2 ENSG00000271427 NONHSAG002551.2 GDAP2 LINC01525
GH01J117266 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 5.2 -2.6 -2593 6 ZNF217 TEAD4 CLOCK CUX1 CHD1 GATAD2B CTBP1 POLR2A HCFC1 SIN3A VTCN1 TRIM45 MAN1A2 LINC01525 lnc-VTCN1-2 ENSG00000277141
GH01J117535 Enhancer 1.1 Ensembl ENCODE 5.1 +264.3 264319 3.4 HNRNPK ZNF217 CTCF TEAD4 REST AFF1 TOE1 RAD21 CTBP1 TRIM22 MAN1A2 TENT5C LOC100996263 ENSG00000212266 ENSG00000271427 LINC01525 lnc-FAM46C-2 VPS25P1
GH01J117341 Enhancer 0.5 Ensembl 5.3 +69.1 69119 0.2 CEBPB TRIM28 PKNOX1 ZBTB20 ZNF792 GABPA CEBPA MAN1A2 LINC01525 lnc-MAN1A2-2 ENSG00000271427
GH01J117540 Enhancer 0.5 Ensembl 5.1 +269.3 269319 1.4 FOS CEBPB MYC STAT1 ZNF217 RAD21 CEBPG MAN1A2 ENSG00000212266 LINC01525 VPS25P1 lnc-FAM46C-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01525 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01525 Gene

Genomic Locations for LINC01525 Gene
chr1:117,272,182-117,321,634
(GRCh38/hg38)
Size:
49,453 bases
Orientation:
Plus strand
chr1:117,838,142-117,863,958
(GRCh37/hg19)
Size:
25,817 bases
Orientation:
Plus strand

Genomic View for LINC01525 Gene

Genes around LINC01525 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01525 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01525 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01525 Gene

Proteins for LINC01525 Gene

Post-translational modifications for LINC01525 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01525 Gene

Domains & Families for LINC01525 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01525 Gene

Function for LINC01525 Gene

Phenotypes From GWAS Catalog for LINC01525 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01525 Gene

Localization for LINC01525 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01525 Gene

Pathways & Interactions for LINC01525 Gene

PathCards logo

SuperPathways for LINC01525 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01525 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01525 Gene

Drugs & Compounds for LINC01525 Gene

No Compound Related Data Available

Transcripts for LINC01525 Gene

mRNA/cDNA for LINC01525 Gene

11 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
5 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01525 Gene

No ASD Table

Relevant External Links for LINC01525 Gene

GeneLoc Exon Structure for
LINC01525

Expression for LINC01525 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01525 Gene

genes like me logo Genes that share expression patterns with LINC01525: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01525 Gene

Orthologs for LINC01525 Gene

Evolution for LINC01525 Gene

ENSEMBL:
Gene Tree for LINC01525 (if available)
TreeFam:
Gene Tree for LINC01525 (if available)

No data available for Orthologs for LINC01525 Gene

Paralogs for LINC01525 Gene

No data available for Paralogs for LINC01525 Gene

Variants for LINC01525 Gene

Additional dbSNP identifiers (rs#s) for LINC01525 Gene

Additional Variant Information for LINC01525 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01525

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01525 Gene

Disorders for LINC01525 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01525 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
tongue squamous cell carcinoma
  • squamous cell carcinoma of tongue
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01525

genes like me logo Genes that share disorders with LINC01525: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01525 Gene

Publications for LINC01525 Gene

  1. Long non-coding RNA deregulation in tongue squamous cell carcinoma. (PMID: 25045670) Gao W … Wong TS (BioMed research international 2014) 2 3 54

Products for LINC01525 Gene

Sources for LINC01525 Gene