Aliases for LINC01524 Gene

Subcategory (RNA class) for LINC01524 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01524 Gene

  • Long Intergenic Non-Protein Coding RNA 1524 2 3 5
  • LINC01524 2 168
  • NONHSAG032034 92
  • HSALNG0130878 167

External Ids for LINC01524 Gene

Previous GeneCards Identifiers for LINC01524 Gene

  • GC20P052210

Summaries for LINC01524 Gene

GeneCards Summary for LINC01524 Gene

LINC01524 (Long Intergenic Non-Protein Coding RNA 1524) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC01524 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for LINC01524 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC01524 Gene

Genomics for LINC01524 Gene

GeneHancer (GH) Regulatory Elements for LINC01524 Gene

Promoters and enhancers for LINC01524 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J052190 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 -0.6 -554 3.2 HNRNPK ZBTB40 ZNF217 CTCF SIN3A NRF1 POLR2G NCOR1 PHF8 ZFX ZFP64 LINC01524 piR-48759-188
GH20J052971 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.5 +783.7 783732 9 EP300 ZSCAN5C ZNF639 ZNF354C ZNF10 ZIC2 ZBTB10 ZNF623 ZBTB26 SAP30 TSHZ2 ZFP64 LINC01524 ENSG00000232294 HSALNG0130913
GH20J052619 Enhancer 0.5 Ensembl 4.4 +427.5 427541 0.6 EP300 SMC3 MXI1 BMI1 POLR2A RAD21 LOC105372665 LINC01524 piR-35674-312 LOC105372666
GH20J052621 Enhancer 0.3 ENCODE 4.5 +429.9 429920 1.4 PKNOX1 LINC01524 LOC105372665 piR-35674-312 LOC105372666
GH20J052654 Enhancer 0.2 Ensembl 5.1 +462.5 462542 0.6 LINC01524 ZFP64 LOC105376985 piR-35674-312 LOC105372666
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01524 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01524 Gene

Genomic Locations for LINC01524 Gene
chr20:52,192,159-52,670,578
(GRCh38/hg38)
Size:
478,420 bases
Orientation:
Plus strand
chr20:50,827,184-51,266,970
(GRCh37/hg19)
Size:
439,787 bases
Orientation:
Plus strand

Genomic View for LINC01524 Gene

Genes around LINC01524 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01524 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01524 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01524 Gene

Proteins for LINC01524 Gene

Post-translational modifications for LINC01524 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01524 Gene

Domains & Families for LINC01524 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01524 Gene

Function for LINC01524 Gene

Phenotypes From GWAS Catalog for LINC01524 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01524 Gene

Localization for LINC01524 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01524 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01524 Gene

Pathways & Interactions for LINC01524 Gene

PathCards logo

SuperPathways for LINC01524 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01524 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01524 Gene

Drugs & Compounds for LINC01524 Gene

No Compound Related Data Available

Transcripts for LINC01524 Gene

mRNA/cDNA for LINC01524 Gene

52 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
37 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
6 LncBook transcripts :
16 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01524 Gene

No ASD Table

Relevant External Links for LINC01524 Gene

GeneLoc Exon Structure for
LINC01524

Expression for LINC01524 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01524 Gene

genes like me logo Genes that share expression patterns with LINC01524: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01524 Gene

Orthologs for LINC01524 Gene

Evolution for LINC01524 Gene

ENSEMBL:
Gene Tree for LINC01524 (if available)
TreeFam:
Gene Tree for LINC01524 (if available)

No data available for Orthologs for LINC01524 Gene

Paralogs for LINC01524 Gene

No data available for Paralogs for LINC01524 Gene

Variants for LINC01524 Gene

Additional dbSNP identifiers (rs#s) for LINC01524 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01524 Gene

Variant ID Type Subtype PubMed ID
esv2722526 CNV deletion 23290073
esv3557193 CNV deletion 23714750

Additional Variant Information for LINC01524 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01524

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01524 Gene

Disorders for LINC01524 Gene

Additional Disease Information for LINC01524

No disorders were found for LINC01524 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01524 Gene

Publications for LINC01524 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01524 Gene

Sources for LINC01524 Gene