LINC01523 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1523

GC20P047983
GIFtS:
12
See more...

Aliases for LINC01523 Gene

Subcategory (RNA class) for LINC01523 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01523 Gene

  • Long Intergenic Non-Protein Coding RNA 1523 2 3 5
  • LINC01523 2 5 165
  • NONHSAG031948.2 91
  • HSALNG0130590 164

External Ids for LINC01523 Gene

Summaries for LINC01523 Gene

GeneCards Summary for LINC01523 Gene

LINC01523 (Long Intergenic Non-Protein Coding RNA 1523) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01523 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01523 Gene

Genomics for LINC01523 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01523 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20J047982 Enhancer 0.8 Ensembl dbSUPER 600.7 +0.1 129 1.8 ZIC2 PKNOX1 RUNX3 KLF4 NFXL1 NR2F1 EBF1 GLIS1 ATF7 KLF1 LINC01523 LINC01522 SULF2 PREX1
GH20J047984 Enhancer 0.6 Ensembl dbSUPER 600.7 +1.9 1928 1.6 SCRT2 KLF4 SCRT1 GLIS1 ZNF217 FOSL2 LINC01523 ENSG00000228503 LINC01522 SULF2 PREX1
GH20J047983 Enhancer 0.4 Ensembl dbSUPER 600.7 -1.1 -1071 0.2 NFXL1 LINC01523 ENSG00000287443 LINC01522 SULF2 PREX1
GH20J047989 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +6.5 6495 1.9 ZNF629 ZNF692 FOXA1 ZIC2 PATZ1 ZNF600 ZNF341 PKNOX1 ZNF561 ZBTB44 LINC01522 lnc-NCOA3-30 ENSG00000228503 LINC01523 SULF2 PREX1
GH20J047978 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 0.7 -3.4 -3386 1.8 YBX1 KDM1A RBAK SMARCA5 CREB1 ZNF217 KLF9 ELF1 SIX4 ZMYM3 ARFGEF2 ENSG00000228503 LINC01523 LOC112268266 ENSG00000287443 LINC01522 SULF2 PREX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01523 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01523 Gene

Genomic Locations for LINC01523 Gene
chr20:47,983,172-47,984,380
(GRCh38/hg38)
Size:
1,209 bases
Orientation:
Plus strand
chr20:46,612,148-46,613,057
(GRCh37/hg19)
Size:
910 bases
Orientation:
Plus strand

Genomic View for LINC01523 Gene

Genes around LINC01523 on UCSC Golden Path with GeneCards custom track
LINC01523 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01523 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01523 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01523 Gene

Proteins for LINC01523 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01523 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01523 Gene

Domains & Families for LINC01523 Gene

Gene Families for LINC01523 Gene

HGNC:
genes like me logo Genes that share domains with LINC01523: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01523 Gene

Function for LINC01523 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01523 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01523 Gene

Localization for LINC01523 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01523 Gene

Pathways & Interactions for LINC01523 Gene

PathCards logo

SuperPathways for LINC01523 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01523 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01523 Gene

Drugs & Compounds for LINC01523 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC01523 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01523 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000003DE3_9606 lncRNA 450 4

Ensembl: ENST00000425385 (view in UCSC) ,

LncBook: HSALNT0268112,

LNCipedia: LINC01523:3,

NONCODE: NONHSAT080116.2,

URS000075E74C_9606 lncRNA 628 2

HGNC: 51225,

RefSeq: NR_109942,

URS00008B3C5D_9606 lncRNA 429 3

LncBook: HSALNT0268111,

LNCipedia: LINC01523:1,

NONCODE: NONHSAT080115.2,

URS0000D5A9D4_9606 lncRNA 628 1

LNCipedia: LINC01523:2,

URS00009B7B84_9606 lncRNA 450 1

NONCODE: NONHSAT188847.1,

LINC01523 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01523 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01523 Gene

No ASD Table

Relevant External Links for LINC01523 Gene

GeneLoc Exon Structure for
LINC01523

Expression for LINC01523 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01523 Gene

mRNA expression in normal human tissues for LINC01523 Gene
mRNA expression by GTEx for LINC01523 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01523

genes like me logo Genes that share expression patterns with LINC01523: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01523 Gene

Orthologs for LINC01523 Gene

Evolution for LINC01523 Gene

ENSEMBL:
Gene Tree for LINC01523 (if available)
TreeFam:
Gene Tree for LINC01523 (if available)

No data available for Orthologs for LINC01523 Gene

Paralogs for LINC01523 Gene

No data available for Paralogs for LINC01523 Gene

Variants for LINC01523 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01523 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01523 Gene

Variant ID Type Subtype PubMed ID
dgv2259n106 OTHER inversion 24896259
dgv4322n100 CNV loss 25217958
esv2722468 CNV deletion 23290073
esv2763661 CNV gain 21179565
esv3589 OTHER complex 18987735
esv3645979 CNV loss 21293372
esv3893343 CNV gain 25118596
nsv1149619 OTHER inversion 26484159
nsv458999 CNV gain 19166990
nsv470553 CNV gain 18288195
nsv509773 CNV insertion 20534489
nsv524004 CNV gain 19592680
nsv586157 CNV gain 21841781

Additional Variant Information for LINC01523 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01523

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01523 Gene

Disorders for LINC01523 Gene

Additional Disease Information for LINC01523

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01523 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01523 Gene

Publications for LINC01523 Gene

No publications were found for LINC01523 Gene.

No data available for Mastermind for LINC01523 Gene

Products for LINC01523 Gene

Sources for LINC01523 Gene