Aliases for LINC01522 Gene

Subcategory (RNA class) for LINC01522 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01522 Gene

  • Long Intergenic Non-Protein Coding RNA 1522 2 3 5
  • LINC01522 2 5 165
  • NONHSAG031947.2 91
  • HSALNG0130585 164

External Ids for LINC01522 Gene

Summaries for LINC01522 Gene

GeneCards Summary for LINC01522 Gene

LINC01522 (Long Intergenic Non-Protein Coding RNA 1522) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01522 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01522 Gene

Genomics for LINC01522 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01522 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J047989 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +0.5 460 1.9 ZNF629 ZNF692 FOXA1 ZIC2 PATZ1 ZNF600 ZNF341 PKNOX1 ZNF561 ZBTB44 LINC01522 lnc-NCOA3-30 ENSG00000228503 LINC01523 SULF2 PREX1
GH20J047978 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 0.4 +10.3 10341 1.8 YBX1 KDM1A RBAK SMARCA5 CREB1 ZNF217 KLF9 ELF1 SIX4 ZMYM3 ARFGEF2 ENSG00000228503 LINC01523 LOC112268266 ENSG00000287443 LINC01522 SULF2 PREX1
GH20J047982 Enhancer 0.8 Ensembl dbSUPER 0.4 +6.8 6826 1.8 ZIC2 PKNOX1 RUNX3 KLF4 NFXL1 NR2F1 EBF1 GLIS1 ATF7 KLF1 LINC01523 LINC01522 SULF2 PREX1
GH20J047984 Enhancer 0.6 Ensembl dbSUPER 0.4 +5.0 5027 1.6 SCRT2 KLF4 SCRT1 GLIS1 ZNF217 FOSL2 LINC01523 ENSG00000228503 LINC01522 SULF2 PREX1
GH20J047977 Enhancer 0.6 Ensembl dbSUPER 0.4 +12.9 12948 0.4 POLR2A RAD21 MBD2 CTCF SIX4 FOSL2 ENSG00000287443 LOC112268266 LINC01523 LINC01522 SULF2 PREX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01522 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01522 Gene

Genomic Locations for LINC01522 Gene
chr20:47,976,697-47,990,127
(GRCh38/hg38)
Size:
13,431 bases
Orientation:
Minus strand
chr20:46,609,232-46,617,488
(GRCh37/hg19)
Size:
8,257 bases
Orientation:
Minus strand

Genomic View for LINC01522 Gene

Genes around LINC01522 on UCSC Golden Path with GeneCards custom track
LINC01522 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01522 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01522 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01522 Gene

Proteins for LINC01522 Gene

Post-translational modifications for LINC01522 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01522 Gene

Domains & Families for LINC01522 Gene

Gene Families for LINC01522 Gene

genes like me logo Genes that share domains with LINC01522: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01522 Gene

Function for LINC01522 Gene

Phenotypes From GWAS Catalog for LINC01522 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01522 Gene

Localization for LINC01522 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01522 Gene

Pathways & Interactions for LINC01522 Gene

PathCards logo

SuperPathways for LINC01522 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01522 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01522 Gene

Drugs & Compounds for LINC01522 Gene

No Compound Related Data Available

Transcripts for LINC01522 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01522 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B139_9606 lncRNA 925 2

HGNC: 51224,

RefSeq: NR_110027,

URS00005BCB47_9606 lncRNA 429 2

Ensembl: ENST00000428999 (view in UCSC) ,

LNCipedia: LINC01522:4,

URS00019905B5_9606 lncRNA 2606 1

Ensembl: ENST00000673791 (view in UCSC) ,

URS0000EF5B80_9606 lncRNA 1926 1

Ensembl: ENST00000671461 (view in UCSC) ,

URS0000EEDFCC_9606 lncRNA 1735 1

Ensembl: ENST00000655778 (view in UCSC) ,

LINC01522 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01522 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01522 Gene

No ASD Table

Relevant External Links for LINC01522 Gene

GeneLoc Exon Structure for
LINC01522

Expression for LINC01522 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01522 Gene

genes like me logo Genes that share expression patterns with LINC01522: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01522 Gene

Orthologs for LINC01522 Gene

Evolution for LINC01522 Gene

ENSEMBL:
Gene Tree for LINC01522 (if available)
TreeFam:
Gene Tree for LINC01522 (if available)

No data available for Orthologs for LINC01522 Gene

Paralogs for LINC01522 Gene

No data available for Paralogs for LINC01522 Gene

Variants for LINC01522 Gene

Additional dbSNP identifiers (rs#s) for LINC01522 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01522 Gene

Variant ID Type Subtype PubMed ID
dgv2259n106 OTHER inversion 24896259
dgv4322n100 CNV loss 25217958
esv2722468 CNV deletion 23290073
esv2763661 CNV gain 21179565
esv3589 OTHER complex 18987735
esv3645979 CNV loss 21293372
esv3893343 CNV gain 25118596
nsv1149619 OTHER inversion 26484159
nsv458999 CNV gain 19166990
nsv470553 CNV gain 18288195
nsv509773 CNV insertion 20534489
nsv524004 CNV gain 19592680
nsv586157 CNV gain 21841781
nsv586163 CNV loss 21841781

Additional Variant Information for LINC01522 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01522

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01522 Gene

Disorders for LINC01522 Gene

No disorders were found for LINC01522 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01522 Gene

Publications for LINC01522 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LINC01522 Gene

Products for LINC01522 Gene

Sources for LINC01522 Gene