Aliases for LINC01518 Gene

Data sources for LINC01518 Gene:

Subcategory (RNA class) for LINC01518 Gene

lncRNA

Aliases for LINC01518 Gene

External Ids for LINC01518 Gene

Previous GeneCards Identifiers for LINC01518 Gene

  • GC10M042673

Summaries for LINC01518 Gene

GeneCards Summary for LINC01518 Gene

LINC01518 (Long Intergenic Non-Protein Coding RNA 1518) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01518 include Hirschsprung Disease 1.

Additional gene information for LINC01518 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01518 Gene

Genomics for LINC01518 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01518 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J042691 Promoter 0.6 EPDnew 250.7 +0.3 332 0.1 CTCF ZBTB33 CHD2 LINC01518 piR-56861 ZNF33B BMS1
GH10J042643 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +46.2 46237 3.9 TBP ZNF217 IKZF1 IRF2 MBD2 ELF1 ARNT ZNF395 REST NFATC3 piR-47269 LINC00839 ZNF33B ZNF239 ENSG00000285884 piR-37597 LOC105378268 LINC01518 BMS1
GH10J042652 Enhancer 1 ENCODE dbSUPER 0.3 +38.3 38331 3 IKZF1 ARNT VEZF1 NBN ZEB2 TAL1 RXRA NCOR1 ZNF316 IRF9 piR-36427 LINC00839 ZNF32-AS2 BMS1 ZNF33B ZNF485 piR-37597 ENSG00000285884 LINC01518
GH10J042689 Enhancer 0.3 Ensembl 0.7 +2.3 2278 0.8 ZNF316 piR-56861 ZNF33B LOC441666 LINC01518 piR-50559 BMS1
GH10J042650 Enhancer 0.4 Ensembl 0.3 +41.6 41578 1 EHMT2 ZBTB40 GABPB1 ETV6 piR-37597 piR-47269 ZNF33B ENSG00000285884 LINC01518 BMS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01518 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01518 Gene

Latest Assembly
chr10:42,644,445-42,692,079
(GRCh38/hg38)
Size:
47,635 bases
Orientation:
Minus strand

Previous Assembly
chr10:43,168,461-43,187,207
(GRCh37/hg19 by Entrez Gene)
Size:
18,747 bases
Orientation:
Minus strand

chr10:43,169,645-43,187,171
(GRCh37/hg19 by Ensembl)
Size:
17,527 bases
Orientation:
Minus strand

Genomic View for LINC01518 Gene

Genes around LINC01518 on UCSC Golden Path with GeneCards custom track
LINC01518 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01518 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01518 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01518 Gene

Proteins for LINC01518 Gene

Post-translational modifications for LINC01518 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01518 Gene

Domains & Families for LINC01518 Gene

Gene Families for LINC01518 Gene

genes like me logo Genes that share domains with LINC01518: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01518 Gene

Function for LINC01518 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01518 Gene

Localization for LINC01518 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01518 Gene

Pathways & Interactions for LINC01518 Gene

PathCards logo

SuperPathways for LINC01518 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01518 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01518 Gene

Drugs & Compounds for LINC01518 Gene

No Compound Related Data Available

Transcripts for LINC01518 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01518 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CDAB_9606 lncRNA 1861 3

RefSeq: NR_120659,

LNCipedia: LINC01518:6,

NONCODE: NONHSAT156917.1,

URS000075BE5D_9606 lncRNA 1850 2

RefSeq: NR_120656,

LNCipedia: LINC01518:3,

URS000075E771_9606 lncRNA 1743 2

RefSeq: NR_120657,

LNCipedia: LINC01518:4,

URS000075E88B_9606 lncRNA 1735 2

RefSeq: NR_120658,

LNCipedia: LINC01518:5,

URS0000EEEC8E_9606 lncRNA 1701 1

Ensembl: ENST00000668437 (view in UCSC) ,

LINC01518 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01518 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01518 Gene

No ASD Table

Relevant External Links for LINC01518 Gene

GeneLoc Exon Structure for
LINC01518

Expression for LINC01518 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01518 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01518

genes like me logo Genes that share expression patterns with LINC01518: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01518 Gene

Orthologs for LINC01518 Gene

Evolution for LINC01518 Gene

ENSEMBL:
Gene Tree for LINC01518 (if available)
TreeFam:
Gene Tree for LINC01518 (if available)

No data available for Orthologs for LINC01518 Gene

Paralogs for LINC01518 Gene

No data available for Paralogs for LINC01518 Gene

Variants for LINC01518 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01518 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01518 Gene

Variant ID Type Subtype PubMed ID
esv2665190 CNV deletion 23128226
esv2671987 CNV deletion 23128226
esv2759746 CNV loss 17122850
esv2764213 CNV gain+loss 21179565
esv33252 CNV loss 17666407
esv34929 CNV loss 17911159
esv3623020 CNV loss 21293372
esv3623021 CNV loss 21293372
esv3623022 CNV loss 21293372
esv3623023 CNV loss 21293372
esv3623024 CNV gain 21293372
esv3891795 CNV gain 25118596
nsv1042764 CNV gain 25217958
nsv1046582 CNV gain 25217958
nsv469725 CNV gain 16826518
nsv550672 CNV gain 21841781
nsv947887 CNV duplication 23825009
nsv951563 CNV deletion 24416366

Additional Variant Information for LINC01518 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01518

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01518 Gene

Disorders for LINC01518 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01518 Gene - From: COP

Disorder Aliases PubMed IDs
hirschsprung disease 1
  • hirschsprung disease, susceptibility to, 1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01518

genes like me logo Genes that share disorders with LINC01518: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01518 Gene

Publications for LINC01518 Gene

  1. Epidermal long non-coding RNAs are regulated by ultraviolet irradiation. (PMID: 28942040) Kim KH … Lee TR (Gene 2017) 2 3
  2. LINC01518 knockdown inhibits tumorigenicity by suppression of PIK3CA/Akt pathway in oesophageal squamous cell carcinoma. (PMID: 31810385) Zhang D … Li L (Artificial cells, nanomedicine, and biotechnology 2019) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01518 Gene

Sources for LINC01518 Gene