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Aliases for LINC01518 Gene
Subcategory (RNA class) for LINC01518 Gene
lncRNA
Aliases for LINC01518 Gene
External Ids for LINC01518 Gene
- HGNC: 51216
- NCBI Entrez Gene: 101929397
- Ensembl: ENSG00000233515
Previous GeneCards Identifiers for LINC01518 Gene
- GC10M042673
Summaries for LINC01518 Gene
GeneCards Summary for LINC01518 Gene
LINC01518 (Long Intergenic Non-Protein Coding RNA 1518) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01518 include Hirschsprung Disease 1.
Additional gene information for LINC01518 Gene
- HGNC (51216)
- NCBI Entrez Gene (101929397)
- Ensembl (ENSG00000233515)
- Open Targets Platform(ENSG00000233515)
- Search for LINC01518 at DataMed
- Search for LINC01518 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01518 Gene
Genomics for LINC01518 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01518 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH10J042691 | Promoter | 0.6 | EPDnew | 250.7 | +0.3 | 332 | 0.1 | CTCF ZBTB33 CHD2 | LINC01518 piR-56861 ZNF33B BMS1 | |
| GH10J042643 | Enhancer | 1.3 | Ensembl ENCODE dbSUPER | 0.3 | +46.2 | 46237 | 3.9 | TBP ZNF217 IKZF1 IRF2 MBD2 ELF1 ARNT ZNF395 REST NFATC3 | piR-47269 LINC00839 ZNF33B ZNF239 ENSG00000285884 piR-37597 LOC105378268 LINC01518 BMS1 | |
| GH10J042652 | Enhancer | 1 | ENCODE dbSUPER | 0.3 | +38.3 | 38331 | 3 | IKZF1 ARNT VEZF1 NBN ZEB2 TAL1 RXRA NCOR1 ZNF316 IRF9 | piR-36427 LINC00839 ZNF32-AS2 BMS1 ZNF33B ZNF485 piR-37597 ENSG00000285884 LINC01518 | |
| GH10J042689 | Enhancer | 0.3 | Ensembl | 0.7 | +2.3 | 2278 | 0.8 | ZNF316 | piR-56861 ZNF33B LOC441666 LINC01518 piR-50559 BMS1 | |
| GH10J042650 | Enhancer | 0.4 | Ensembl | 0.3 | +41.6 | 41578 | 1 | EHMT2 ZBTB40 GABPB1 ETV6 | piR-37597 piR-47269 ZNF33B ENSG00000285884 LINC01518 BMS1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01518 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01518 Gene
Latest Assembly
- chr10:42,644,445-42,692,079
- (GRCh38/hg38)
- Size:
- 47,635 bases
- Orientation:
- Minus strand
Previous Assembly
- chr10:43,168,461-43,187,207
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 18,747 bases
- Orientation:
- Minus strand
- chr10:43,169,645-43,187,171
- (GRCh37/hg19 by Ensembl)
- Size:
- 17,527 bases
- Orientation:
- Minus strand
Genomic View for LINC01518 Gene
Genes around LINC01518 on UCSC Golden Path with GeneCards custom track
LINC01518 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 10q11.21 by HGNC
- 10q11.21 by Entrez Gene
- 10q11.21 by Ensembl
LINC01518 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01518 Gene
Proteins for LINC01518 Gene
Post-translational modifications for LINC01518 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01518 Gene
Domains & Families for LINC01518 Gene
Gene Families for LINC01518 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01518 Gene
Function for LINC01518 Gene
Phenotypes From GWAS Catalog for LINC01518 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01518 Gene
Localization for LINC01518 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01518 Gene
Transcripts for LINC01518 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01518 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075CDAB_9606 | lncRNA | 1861 | 3 |
RefSeq: NR_120659, LNCipedia: LINC01518:6, NONCODE: NONHSAT156917.1, |
| URS000075BE5D_9606 | lncRNA | 1850 | 2 |
RefSeq: NR_120656, LNCipedia: LINC01518:3, |
| URS000075E771_9606 | lncRNA | 1743 | 2 |
RefSeq: NR_120657, LNCipedia: LINC01518:4, |
| URS000075E88B_9606 | lncRNA | 1735 | 2 |
RefSeq: NR_120658, LNCipedia: LINC01518:5, |
| URS0000EEEC8E_9606 | lncRNA | 1701 | 1 |
Ensembl: ENST00000668437 (view in UCSC) , |
LINC01518 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01518 Gene
- 5 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01518 Gene
- GeneLoc Exon Structure for
- LINC01518
Expression for LINC01518 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01518
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01518 Gene
Orthologs for LINC01518 Gene
No data available for Orthologs for LINC01518 Gene
Paralogs for LINC01518 Gene
No data available for Paralogs for LINC01518 Gene
Variants for LINC01518 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2665190 | CNV | deletion | 23128226 |
| esv2671987 | CNV | deletion | 23128226 |
| esv2759746 | CNV | loss | 17122850 |
| esv2764213 | CNV | gain+loss | 21179565 |
| esv33252 | CNV | loss | 17666407 |
| esv34929 | CNV | loss | 17911159 |
| esv3623020 | CNV | loss | 21293372 |
| esv3623021 | CNV | loss | 21293372 |
| esv3623022 | CNV | loss | 21293372 |
| esv3623023 | CNV | loss | 21293372 |
| esv3623024 | CNV | gain | 21293372 |
| esv3891795 | CNV | gain | 25118596 |
| nsv1042764 | CNV | gain | 25217958 |
| nsv1046582 | CNV | gain | 25217958 |
| nsv469725 | CNV | gain | 16826518 |
| nsv550672 | CNV | gain | 21841781 |
| nsv947887 | CNV | duplication | 23825009 |
| nsv951563 | CNV | deletion | 24416366 |
Additional Variant Information for LINC01518 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01518
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01518 Gene
Disorders for LINC01518 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| hirschsprung disease 1 |
|
|
Search LINC01518 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC01518
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01518 Gene
Publications for LINC01518 Gene
- Epidermal long non-coding RNAs are regulated by ultraviolet irradiation. (PMID: 28942040) Kim KH … Lee TR (Gene 2017) 2 3
- LINC01518 knockdown inhibits tumorigenicity by suppression of PIK3CA/Akt pathway in oesophageal squamous cell carcinoma. (PMID: 31810385) Zhang D … Li L (Artificial cells, nanomedicine, and biotechnology 2019) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for LINC01518 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01518
- Origene Custom Protein Services for LINC01518
- Browse OriGene Inhibitory RNA Products For LINC01518
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01518
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01518
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01518
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01518
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01518
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01518
Sources for LINC01518 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB