Aliases for LINC01517 Gene

Subcategory (RNA class) for LINC01517 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01517 Gene

  • Long Intergenic Non-Protein Coding RNA 1517 2 3 5
  • LINC01517 2 170
  • HSALNG0076936 169
  • HSALNG0076923 169
  • NONHSAG005487 94
  • NONHSAG005492 94

External Ids for LINC01517 Gene

Previous GeneCards Identifiers for LINC01517 Gene

  • GC10P028792

Summaries for LINC01517 Gene

GeneCards Summary for LINC01517 Gene

LINC01517 (Long Intergenic Non-Protein Coding RNA 1517) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01517 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01517 Gene

Genomics for LINC01517 Gene

GeneHancer (GH) Regulatory Elements for LINC01517 Gene

Promoters and enhancers for LINC01517 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01517 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01517 Gene

Genomic Locations for LINC01517 Gene
chr10:28,743,506-28,978,026
(GRCh38/hg38)
Size:
234,521 bases
Orientation:
Plus strand
chr10:29,081,732-29,097,148
(GRCh37/hg19)
Size:
15,417 bases
Orientation:
Plus strand

Genomic View for LINC01517 Gene

Genes around LINC01517 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01517 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01517 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01517 Gene

Proteins for LINC01517 Gene

Post-translational modifications for LINC01517 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01517 Gene

Domains & Families for LINC01517 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01517 Gene

Function for LINC01517 Gene

Phenotypes From GWAS Catalog for LINC01517 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01517 Gene

Localization for LINC01517 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01517 Gene

Pathways & Interactions for LINC01517 Gene

PathCards logo

SuperPathways for LINC01517 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01517 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01517 Gene

Drugs & Compounds for LINC01517 Gene

No Compound Related Data Available

Transcripts for LINC01517 Gene

mRNA/cDNA for LINC01517 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(17) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(33) RNACentral transcripts :
(21) LncBook transcripts :
(28) LNCipedia transcripts :
(22) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01517 Gene

No ASD Table

Relevant External Links for LINC01517 Gene

GeneLoc Exon Structure for
LINC01517
ECgene alternative splicing isoforms for
LINC01517

Expression for LINC01517 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01517 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01517 Gene:

LINC01517
genes like me logo Genes that share expression patterns with LINC01517: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01517 Gene

Orthologs for LINC01517 Gene

Evolution for LINC01517 Gene

ENSEMBL:
Gene Tree for LINC01517 (if available)
TreeFam:
Gene Tree for LINC01517 (if available)

No data available for Orthologs for LINC01517 Gene

Paralogs for LINC01517 Gene

No data available for Paralogs for LINC01517 Gene

Variants for LINC01517 Gene

Sequence variations from dbSNP and Humsavar for LINC01517 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000036878 -- 28,803,249(+) C/T intron_variant
rs1000056097 -- 28,794,330(+) C/A/T intron_variant
rs1000342258 -- 28,745,890(+) T/A intron_variant
rs1000379704 -- 28,790,756(+) C/T intron_variant
rs1000390560 -- 28,796,976(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01517 Gene

Variant ID Type Subtype PubMed ID
esv2734606 CNV deletion 23290073
esv3447273 CNV insertion 20981092
esv3622755 CNV loss 21293372
nsv1052538 CNV gain 25217958
nsv24600 CNV deletion 16902084

Additional Variant Information for LINC01517 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01517

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01517 Gene

Disorders for LINC01517 Gene

Additional Disease Information for LINC01517

No disorders were found for LINC01517 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01517 Gene

Publications for LINC01517 Gene

No publications were found for LINC01517 Gene.

No data available for External Links for LINC01517 Gene

Products for LINC01517 Gene

Sources for LINC01517 Gene