Aliases for LINC01509 Gene

Data sources for LINC01509 Gene:

RNA type for LINC01509 Gene

lncRNA

Aliases for LINC01509 Gene

External Ids for LINC01509 Gene

Summaries for LINC01509 Gene

GeneCards Summary for LINC01509 Gene

LINC01509 (Long Intergenic Non-Protein Coding RNA 1509) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01509 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01509 Gene

Genomics for LINC01509 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01509 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01509 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01509 Gene

Latest Assembly
chr9:107,418,204-107,466,613
(GRCh38/hg38)
Size:
48,410 bases
Orientation:
Minus strand

Previous Assembly
chr9:110,182,565-110,228,866
(GRCh37/hg19 by Entrez Gene)
Size:
46,302 bases
Orientation:
Minus strand

chr9:110,182,565-110,193,083
(GRCh37/hg19 by Ensembl)
Size:
10,519 bases
Orientation:
Minus strand

Genomic View for LINC01509 Gene

Genes around LINC01509 on UCSC Golden Path with GeneCards custom track
LINC01509 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01509 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01509 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01509 Gene

Proteins for LINC01509 Gene

Post-translational modifications for LINC01509 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01509 Gene

Domains & Families for LINC01509 Gene

Gene Families for LINC01509 Gene

genes like me logo Genes that share domains with LINC01509: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01509 Gene

Function for LINC01509 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01509 Gene

Localization for LINC01509 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01509 Gene

Pathways & Interactions for LINC01509 Gene

PathCards logo

SuperPathways for LINC01509 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01509 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01509 Gene

Drugs & Compounds for LINC01509 Gene

No Compound Related Data Available

Transcripts for LINC01509 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01509 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075A7E4_9606 lncRNA 968 4

RefSeq: NR_121581,

LncBook: HSALNT0153679,

LNCipedia: LINC01509:1,

NONCODE: NONHSAT221147.1,

URS000056FDED_9606 lncRNA 408 2

Ensembl: ENST00000423523 (view in UCSC) ,

LNCipedia: LINC01509:2,

URS0000EEE1D3_9606 lncRNA 932 1

Ensembl: ENST00000659615 (view in UCSC) ,

URS0000EF26FC_9606 lncRNA 803 1

Ensembl: ENST00000655513 (view in UCSC) ,

URS0000EF45B2_9606 lncRNA 718 1

Ensembl: ENST00000654319 (view in UCSC) ,

LINC01509 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01509 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01509 Gene

No ASD Table

Relevant External Links for LINC01509 Gene

GeneLoc Exon Structure for
LINC01509

Expression for LINC01509 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01509 Gene

genes like me logo Genes that share expression patterns with LINC01509: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01509 Gene

Orthologs for LINC01509 Gene

Evolution for LINC01509 Gene

ENSEMBL:
Gene Tree for LINC01509 (if available)
TreeFam:
Gene Tree for LINC01509 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01509

No data available for Orthologs for LINC01509 Gene

Paralogs for LINC01509 Gene

No data available for Paralogs for LINC01509 Gene

Variants for LINC01509 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01509 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01509 Gene

Variant ID Type Subtype PubMed ID
nsv982336 CNV duplication 23825009

Additional Variant Information for LINC01509 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01509
Leiden Open Variation Database (LOVD)
LINC01509

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01509 Gene

Disorders for LINC01509 Gene

Additional Disease Information for LINC01509

No disorders were found for LINC01509 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01509 Gene

Publications for LINC01509 Gene

No publications were found for LINC01509 Gene.

Products for LINC01509 Gene

Sources for LINC01509 Gene