LINC01509 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1509

GC09M107421
GIFtS:
11
See more...

Aliases for LINC01509 Gene

Subcategory (RNA class) for LINC01509 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01509 Gene

  • Long Intergenic Non-Protein Coding RNA 1509 2 3 5
  • LINC01509 2 5 165
  • Prostate Cancer-Associated Transcript 37 3
  • NONHSAG053137.2 91
  • HSALNG0073513 164
  • PRCAT37 3

External Ids for LINC01509 Gene

Summaries for LINC01509 Gene

GeneCards Summary for LINC01509 Gene

LINC01509 (Long Intergenic Non-Protein Coding RNA 1509) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01509 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01509 Gene

Genomics for LINC01509 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01509 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09J107465 Promoter/Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 600.7 +0.7 728 1.3 CTCF RAD21 TRIM22 EZH2 CEBPB SIN3A ZNF143 NKRF LINC01509 KLF4 HMGN2P32 LOC112268052
GH09J107424 Enhancer 1 FANTOM5 ENCODE CraniofacialAtlas 0.3 +41.3 41257 1.3 CTCF TEAD4 KDM1A ZNF7 LARP7 ZNF143 TRIM22 ZFX MGA MAX ENSG00000287233 lnc-KLF4-9 HSALNG0073511 LINC01509 KLF4 LOC112268052
GH09J107437 Enhancer 0.8 Ensembl ENCODE 0.3 +27.9 27929 2 TEAD4 FOXA1 POLR2A FOS OSR2 JUN ZNF217 JUND FOSL1 MAZ lnc-RAD23B-12 KLF4 ENSG00000287233 LINC01509 LOC112268052
GH09J107460 Enhancer 0.6 Ensembl ENCODE 0.4 +6.2 6212 0.4 ATF7 CTCF REST HMGN2P32 LINC01509 KLF4 LOC112268052
GH09J107422 Enhancer 0.9 Ensembl ENCODE 0.3 +43.8 43812 1.6 CTCF TFE3 FOXA1 REST RAD21 ZNF600 GTF2F1 ZNF341 USF2 ZNF10 lnc-KLF4-9 HSALNG0073511 LINC01509 KLF4 LOC112268052
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01509 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01509 Gene

Genomic Locations for LINC01509 Gene
chr9:107,420,191-107,466,613
(GRCh38/hg38)
Size:
46,423 bases
Orientation:
Minus strand
chr9:110,182,565-110,193,083
(GRCh37/hg19)
Size:
10,519 bases
Orientation:
Minus strand

Genomic View for LINC01509 Gene

Genes around LINC01509 on UCSC Golden Path with GeneCards custom track
LINC01509 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01509 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01509 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01509 Gene

Proteins for LINC01509 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01509 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01509 Gene

Domains & Families for LINC01509 Gene

Gene Families for LINC01509 Gene

HGNC:
genes like me logo Genes that share domains with LINC01509: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01509 Gene

Function for LINC01509 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01509 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01509 Gene

Localization for LINC01509 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01509 Gene

Pathways & Interactions for LINC01509 Gene

PathCards logo

SuperPathways for LINC01509 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01509 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01509 Gene

Drugs & Compounds for LINC01509 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC01509 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01509 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A7E4_9606 lncRNA 960 5

HGNC: 51193,

RefSeq: NR_121581,

LncBook: HSALNT0153679,

LNCipedia: LINC01509:1,

NONCODE: NONHSAT221147.1,

URS000056FDED_9606 lncRNA 408 2

Ensembl: ENST00000423523 (view in UCSC) ,

LNCipedia: LINC01509:2,

URS0000EEE1D3_9606 lncRNA 932 1

Ensembl: ENST00000659615 (view in UCSC) ,

URS0000EF26FC_9606 lncRNA 803 1

Ensembl: ENST00000655513 (view in UCSC) ,

URS0000EF45B2_9606 lncRNA 718 1

Ensembl: ENST00000654319 (view in UCSC) ,

LINC01509 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01509 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01509 Gene

No ASD Table

Relevant External Links for LINC01509 Gene

GeneLoc Exon Structure for
LINC01509

Expression for LINC01509 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01509 Gene

mRNA expression in normal human tissues for LINC01509 Gene
mRNA expression by GTEx for LINC01509 Gene
genes like me logo Genes that share expression patterns with LINC01509: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01509 Gene

Orthologs for LINC01509 Gene

Evolution for LINC01509 Gene

ENSEMBL:
Gene Tree for LINC01509 (if available)
TreeFam:
Gene Tree for LINC01509 (if available)

No data available for Orthologs for LINC01509 Gene

Paralogs for LINC01509 Gene

No data available for Paralogs for LINC01509 Gene

Variants for LINC01509 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01509 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01509 Gene

Variant ID Type Subtype PubMed ID
nsv982336 CNV duplication 23825009

Additional Variant Information for LINC01509 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01509

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01509 Gene

Disorders for LINC01509 Gene

Additional Disease Information for LINC01509

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC01509 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01509 Gene

Publications for LINC01509 Gene

No publications were found for LINC01509 Gene.

ExternalLinks

View latest publications for LINC01509 gene in Mastermind

Products for LINC01509 Gene

Sources for LINC01509 Gene