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Aliases for LINC01507 Gene

Subcategory (RNA class) for LINC01507 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01507 Gene

  • Long Intergenic Non-Protein Coding RNA 1507 2 3 5
  • XLOC_000303 3

External Ids for LINC01507 Gene

Previous GeneCards Identifiers for LINC01507 Gene

  • GC09P079986

Summaries for LINC01507 Gene

GeneCards Summary for LINC01507 Gene

LINC01507 (Long Intergenic Non-Protein Coding RNA 1507) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01507 include Colorectal Cancer.

Additional gene information for LINC01507 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01507 Gene

Genomics for LINC01507 Gene

GeneHancer (GH) Regulatory Elements for LINC01507 Gene

Promoters and enhancers for LINC01507 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J079824 Enhancer 0.3 FANTOM5 650.7 -0.2 -194 0.4 LOC105376334 LINC01507
GH09J079974 Enhancer 1.4 VISTA UCNEbase ENCODE 7.6 +152.0 151998 3.5 PKNOX1 GATA3 L3MBTL2 ZNF143 CREB1 ATF7 MAFK ATF2 EZH2 ENSG00000280366 LINC01507 LOC105376099
GH09J079857 Enhancer 0.6 Ensembl ENCODE 0.3 +33.9 33862 0.9 IRF2 PKNOX1 NFYB PIR48984 PIR51582 PIR33595 PIRC44 LINC01507
GH09J079834 Enhancer 0.4 ENCODE 0.4 +10.4 10388 1.1 USF1 SPI1 ETS1 LINC01507 LOC105376334 PIRC44
GH09J079878 Enhancer 0.8 FANTOM5 ENCODE 0.2 +53.8 53813 0.4 IKZF1 EBF1 BMI1 ELF1 SPI1 PIR33126 GC09M081115 TLE4 PIR34025 LOC105376101 PIRC44 LINC01507
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01507 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01507 Gene

Genomic Locations for LINC01507 Gene
chr9:79,824,530-80,034,555
(GRCh38/hg38)
Size:
210,026 bases
Orientation:
Plus strand
chr9:82,645,494-82,649,470
(GRCh37/hg19)

Genomic View for LINC01507 Gene

Genes around LINC01507 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01507 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01507 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01507 Gene

Proteins for LINC01507 Gene

Post-translational modifications for LINC01507 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01507 Gene

Domains & Families for LINC01507 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01507 Gene

Function for LINC01507 Gene

Phenotypes From GWAS Catalog for LINC01507 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01507 Gene

Localization for LINC01507 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01507 Gene

Pathways & Interactions for LINC01507 Gene

SuperPathways for LINC01507 Gene

No Data Available

Interacting Proteins for LINC01507 Gene

Gene Ontology (GO) - Biological Process for LINC01507 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01507 Gene

Drugs & Compounds for LINC01507 Gene

No Compound Related Data Available

Transcripts for LINC01507 Gene

mRNA/cDNA for LINC01507 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01507 Gene

No ASD Table

Relevant External Links for LINC01507 Gene

GeneLoc Exon Structure for
LINC01507
ECgene alternative splicing isoforms for
LINC01507

Expression for LINC01507 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01507 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01507 Gene:

LINC01507
genes like me logo Genes that share expression patterns with LINC01507: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01507 Gene

Orthologs for LINC01507 Gene

Evolution for LINC01507 Gene

ENSEMBL:
Gene Tree for LINC01507 (if available)
TreeFam:
Gene Tree for LINC01507 (if available)

No data available for Orthologs for LINC01507 Gene

Paralogs for LINC01507 Gene

No data available for Paralogs for LINC01507 Gene

Variants for LINC01507 Gene

Sequence variations from dbSNP and Humsavar for LINC01507 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000009729 -- 80,010,285(+) A/G intron_variant
rs1000015051 -- 79,900,074(+) C/T genic_upstream_transcript_variant, intron_variant
rs1000036212 -- 79,901,774(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000042292 -- 79,895,963(+) T/G genic_upstream_transcript_variant, intron_variant
rs1000053059 -- 79,984,725(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01507 Gene

Variant ID Type Subtype PubMed ID
esv2664816 CNV deletion 23128226
esv2738627 CNV deletion 23290073
esv3620837 CNV loss 21293372
esv3620838 CNV loss 21293372
nsv476465 CNV novel sequence insertion 20440878
nsv516724 CNV loss 19592680
nsv6579 CNV insertion 18451855
nsv820198 CNV gain 19587683
nsv831635 CNV gain 17160897

Additional Variant Information for LINC01507 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01507

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01507 Gene

Disorders for LINC01507 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01507 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01507

genes like me logo Genes that share disorders with LINC01507: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01507 Gene

Publications for LINC01507 Gene

  1. Circulating lncRNAs associated with occurrence of colorectal cancer progression. (PMID: 26328256) Shi J … Hu S (American journal of cancer research 2015) 2 3 58

Products for LINC01507 Gene

Sources for LINC01507 Gene

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