Aliases for LINC01506 Gene

Subcategory (RNA class) for LINC01506 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01506 Gene

  • Long Intergenic Non-Protein Coding RNA 1506 2 3 5
  • LINC01506 2 168
  • NONHSAG052500 92
  • HSALNG0071693 167

External Ids for LINC01506 Gene

Summaries for LINC01506 Gene

GeneCards Summary for LINC01506 Gene

LINC01506 (Long Intergenic Non-Protein Coding RNA 1506) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01506 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01506 Gene

Genomics for LINC01506 Gene

GeneHancer (GH) Regulatory Elements for LINC01506 Gene

Promoters and enhancers for LINC01506 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J068545 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 500.7 -0.1 -128 2.1 SP1 EP300 JUND RELA RCOR1 NFYB BCL11A TCF12 CBFB CTCF LINC01506 TMEM252 PRKACG PGM5 TMEM252-DT piR-32214-689
GH09J068584 Enhancer 1 Ensembl ENCODE 4.9 -37.9 -37924 0.7 RXRA CTCF REST MYC TGIF2 RAD21 TRIM22 TEAD1 SMC3 RELA FAM122A PRKACG LINC01506 lnc-TMEM252-3 piR-32214-689 TMEM252-DT
GH09J068636 Enhancer 0.8 Ensembl ENCODE dbSUPER 4.9 -92.3 -92288 4.6 MEF2B ATF2 JUNB NFIC SPI1 MEF2A EED RUNX3 PIP5K1B PRKACG LINC01506 LOC105376071 RF00017-7604 TMEM252-DT
GH09J068567 Enhancer 0.6 Ensembl 5.1 -21.3 -21305 1 ZNF217 CTCF TEAD4 REST RAD21 TRIM22 TEAD1 SMC3 CTBP1 TCF12 TMEM252 TMEM252-DT PRKACG PGM5 LINC01506 piR-32214-689 lnc-TMEM252-3
GH09J068564 Enhancer 0.5 ENCODE dbSUPER 5.1 -18.1 -18092 0.6 FOS JUND piR-32214-689 PGM5 TMEM252 TMEM252-DT PRKACG LINC01506 lnc-TMEM252-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01506 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01506 Gene

Genomic Locations for LINC01506 Gene
chr9:68,543,540-68,546,615
(GRCh38/hg38)
Size:
3,076 bases
Orientation:
Minus strand
chr9:71,158,457-71,161,505
(GRCh37/hg19)
Size:
3,049 bases
Orientation:
Minus strand

Genomic View for LINC01506 Gene

Genes around LINC01506 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01506 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01506 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01506 Gene

Proteins for LINC01506 Gene

Post-translational modifications for LINC01506 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01506 Gene

Domains & Families for LINC01506 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01506 Gene

Function for LINC01506 Gene

Phenotypes From GWAS Catalog for LINC01506 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01506 Gene

Localization for LINC01506 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01506 Gene

Pathways & Interactions for LINC01506 Gene

PathCards logo

SuperPathways for LINC01506 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01506 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01506 Gene

Drugs & Compounds for LINC01506 Gene

No Compound Related Data Available

Transcripts for LINC01506 Gene

mRNA/cDNA for LINC01506 Gene

9 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01506 Gene

No ASD Table

Relevant External Links for LINC01506 Gene

GeneLoc Exon Structure for
LINC01506

Expression for LINC01506 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01506 Gene

genes like me logo Genes that share expression patterns with LINC01506: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01506 Gene

Orthologs for LINC01506 Gene

Evolution for LINC01506 Gene

ENSEMBL:
Gene Tree for LINC01506 (if available)
TreeFam:
Gene Tree for LINC01506 (if available)

No data available for Orthologs for LINC01506 Gene

Paralogs for LINC01506 Gene

No data available for Paralogs for LINC01506 Gene

Variants for LINC01506 Gene

Additional dbSNP identifiers (rs#s) for LINC01506 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01506 Gene

Variant ID Type Subtype PubMed ID
esv3620544 CNV gain 21293372
esv3891677 CNV gain 25118596
nsv1026962 CNV gain 25217958
nsv614546 CNV gain 21841781

Additional Variant Information for LINC01506 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01506

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01506 Gene

Disorders for LINC01506 Gene

Additional Disease Information for LINC01506

No disorders were found for LINC01506 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01506 Gene

Publications for LINC01506 Gene

No publications were found for LINC01506 Gene.

Products for LINC01506 Gene

Sources for LINC01506 Gene