Aliases for LINC01505 Gene

Subcategory (RNA class) for LINC01505 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01505 Gene

  • Long Intergenic Non-Protein Coding RNA 1505 2 3 5
  • LINC01505 2 5 165
  • RP11-308N19.1 2 3
  • NONHSAG053119.2 91
  • NONHSAG053123.2 91
  • HSALNG0073476 164
  • HSALNG0073482 164

External Ids for LINC01505 Gene

Additional External Ids for LINC01505 Gene

Previous GeneCards Identifiers for LINC01505 Gene

  • GC09P106616

Summaries for LINC01505 Gene

GeneCards Summary for LINC01505 Gene

LINC01505 (Long Intergenic Non-Protein Coding RNA 1505) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01505 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01505 Gene

Genomics for LINC01505 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01505 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J105995 Enhancer 0.5 Ensembl 600.7 +1.9 1891 0.4 JUND REST USF1 FOSL1 USF2 ATF3 FOS RAD51 FOSL2 LINC01505 LOC107987109 TMEM38B ZNF462
GH09J105991 Enhancer 0.5 Ensembl ENCODE 600.7 -0.5 -451 2.1 POLR2A SMARCA4 LINC01505 TMEM38B HSALNG0073463 ZNF462
GH09J106620 Enhancer 0.9 VISTA Ensembl ENCODE CraniofacialAtlas 4.5 +628.0 628014 3 CEBPB CTCF TBP ENSG00000237062 LINC01505 RF00100-156 RN7SKP77 lnc-ZNF462-4 ZNF462 TMEM38B
GH09J105973 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.4 -17.4 -17409 7 POLR2A TCF12 RAD21 NFE2 ZNF316 JUNB EBF1 SMARCA4 RFX5 CHD2 HSALNG0073463 TMEM38B LINC01505 LOC107987108 ZNF462
GH09J106018 Enhancer 0.6 Ensembl ENCODE 0.3 +26.2 26191 3 SOX13 POLR2A NFIA SMARCA4 NANOG LOC107987109 piR-46847-285 LINC01505 TMEM38B ZNF462
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01505 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01505 Gene

Genomic Locations for LINC01505 Gene
chr9:105,993,310-106,740,875
(GRCh38/hg38)
Size:
747,566 bases
Orientation:
Plus strand
chr9:109,040,673-109,367,076
(GRCh37/hg19)
Size:
326,404 bases
Orientation:
Plus strand

Genomic View for LINC01505 Gene

Genes around LINC01505 on UCSC Golden Path with GeneCards custom track
LINC01505 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01505 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01505 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01505 Gene

Proteins for LINC01505 Gene

Post-translational modifications for LINC01505 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01505 Gene

Domains & Families for LINC01505 Gene

Gene Families for LINC01505 Gene

genes like me logo Genes that share domains with LINC01505: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01505 Gene

Function for LINC01505 Gene

Phenotypes From GWAS Catalog for LINC01505 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01505 Gene

Localization for LINC01505 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01505 Gene

Pathways & Interactions for LINC01505 Gene

PathCards logo

SuperPathways for LINC01505 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01505 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01505 Gene

Drugs & Compounds for LINC01505 Gene

No Compound Related Data Available

Transcripts for LINC01505 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01505 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A97BE3_9606 lncRNA 2298 3

Ensembl: ENST00000636028 (view in UCSC) ,

LncBook: HSALNT0153575,

LNCipedia: LINC01505:15,

URS0000541D3F_9606 lncRNA 2054 3

Ensembl: ENST00000444985 (view in UCSC) ,

LNCipedia: LINC01505:2,

NONCODE: NONHSAT133846.2,

URS0000519364_9606 lncRNA 1686 3

Ensembl: ENST00000435485 (view in UCSC) ,

LNCipedia: LINC01505:11,

NONCODE: NONHSAT133834.2,

URS0000AA9833_9606 lncRNA 4266 2

Ensembl: ENST00000637046 (view in UCSC) ,

LNCipedia: LINC01505:14,

URS000075E3BA_9606 lncRNA 2056 2

HGNC: 51186,

RefSeq: NR_104145,

LINC01505 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01505 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01505 Gene

No ASD Table

Relevant External Links for LINC01505 Gene

GeneLoc Exon Structure for
LINC01505

Expression for LINC01505 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01505 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01505

genes like me logo Genes that share expression patterns with LINC01505: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01505 Gene

Orthologs for LINC01505 Gene

Evolution for LINC01505 Gene

ENSEMBL:
Gene Tree for LINC01505 (if available)
TreeFam:
Gene Tree for LINC01505 (if available)

No data available for Orthologs for LINC01505 Gene

Paralogs for LINC01505 Gene

No data available for Paralogs for LINC01505 Gene

Variants for LINC01505 Gene

Additional dbSNP identifiers (rs#s) for LINC01505 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01505 Gene

Variant ID Type Subtype PubMed ID
esv2116516 CNV deletion 18987734
esv3573340 CNV loss 25503493
esv3891705 CNV loss 25118596
nsv521586 CNV loss 19592680

Additional Variant Information for LINC01505 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01505

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01505 Gene

Disorders for LINC01505 Gene

No disorders were found for LINC01505 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01505 Gene

Publications for LINC01505 Gene

  1. Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features. (PMID: 28128360) Lanzós A … Johnson R (Scientific reports 2017) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01505 Gene

Sources for LINC01505 Gene