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Aliases for LINC01505 Gene
Data sources for LINC01505 Gene:
Subcategory (RNA class) for LINC01505 Gene
lncRNA
Aliases for LINC01505 Gene
External Ids for LINC01505 Gene
- HGNC: 51186
- NCBI Entrez Gene: 100996590
- Ensembl: ENSG00000234323
Previous GeneCards Identifiers for LINC01505 Gene
- GC09P106616
Summaries for LINC01505 Gene
GeneCards Summary for LINC01505 Gene
LINC01505 (Long Intergenic Non-Protein Coding RNA 1505) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01505 Gene
- HGNC (51186)
- NCBI Entrez Gene (100996590)
- Ensembl (ENSG00000234323)
- Open Targets Platform(ENSG00000234323)
- Search for LINC01505 at DataMed
- Search for LINC01505 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01505 Gene
Genomics for LINC01505 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01505 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH09J105993 | Enhancer | 0.3 | Ensembl ENCODE | 250.7 | +0.3 | 297 | 1.4 | LINC01505 LOC107987109 HSALNG0073466 HSALNG0073463 TMEM38B ZNF462 | ||
| GH09J105991 | Enhancer | 0.2 | Ensembl | 250.7 | -0.9 | -903 | 0.6 | LINC01505 TMEM38B HSALNG0073465 HSALNG0073463 ZNF462 | ||
| GH09J106620 | Enhancer | 0.6 | VISTA ENCODE CraniofacialAtlas | 4.5 | +628.4 | 628372 | 2.5 | CTCF | ENSG00000237062 LINC01505 lnc-ZNF462-4 ZNF462 TMEM38B | |
| GH09J105973 | Enhancer | 0.9 | Ensembl ENCODE CraniofacialAtlas | 0.4 | -17.4 | -17403 | 6.8 | EBF1 ZNF316 NFE2 JUNB TCF12 GATA2 MAFK POLR2A RAD21 | HSALNG0073465 TMEM38B LINC01505 LOC107987108 HSALNG0073463 ZNF462 | |
| GH09J106018 | Enhancer | 0.6 | Ensembl ENCODE | 0.3 | +26.2 | 26234 | 2.9 | NFIA NANOG SOX13 | HSALNG0073466 piR-46847-285 LOC107987109 LINC01505 TMEM38B ZNF462 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01505 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01505 Gene
Latest Assembly
- chr9:105,993,204-106,740,875
- (GRCh38/hg38)
- Size:
- 747,672 bases
- Orientation:
- Plus strand
Previous Assembly
- chr9:109,378,339-109,442,083
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 63,745 bases
- Orientation:
- Plus strand
- chr9:109,040,673-109,367,076
- (GRCh37/hg19 by Ensembl)
- Size:
- 326,404 bases
- Orientation:
- Plus strand
Genomic View for LINC01505 Gene
Genes around LINC01505 on UCSC Golden Path with GeneCards custom track
LINC01505 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 9q31.2 by HGNC
- 9q31.2 by Entrez Gene
- 9q31.2 by Ensembl
LINC01505 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01505 Gene
Proteins for LINC01505 Gene
Post-translational modifications for LINC01505 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01505 Gene
Domains & Families for LINC01505 Gene
Gene Families for LINC01505 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01505 Gene
Function for LINC01505 Gene
Phenotypes From GWAS Catalog for LINC01505 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01505 Gene
Localization for LINC01505 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01505 Gene
Transcripts for LINC01505 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01505 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000A97BE3_9606 | lncRNA | 2302 | 3 |
Ensembl: ENST00000636028 (view in UCSC) , LncBook: HSALNT0153575, LNCipedia: LINC01505:15, |
| URS0000541D3F_9606 | lncRNA | 2054 | 3 |
Ensembl: ENST00000444985 (view in UCSC) , LNCipedia: LINC01505:2, NONCODE: NONHSAT133846.2, |
| URS0000519364_9606 | lncRNA | 1693 | 3 |
Ensembl: ENST00000435485 (view in UCSC) , LNCipedia: LINC01505:11, NONCODE: NONHSAT133834.2, |
| URS0000AA9833_9606 | lncRNA | 4271 | 2 |
Ensembl: ENST00000637046 (view in UCSC) , LNCipedia: LINC01505:14, |
| URS0000A9CA30_9606 | lncRNA | 1548 | 2 |
Ensembl: ENST00000637185 (view in UCSC) , LNCipedia: LINC01505:10, |
LINC01505 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01505 Gene
- 3 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000411451 686 nts (view in UCSC)
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01505 Gene
- GeneLoc Exon Structure for
- LINC01505
Expression for LINC01505 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01505
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01505 Gene
Orthologs for LINC01505 Gene
No data available for Orthologs for LINC01505 Gene
Paralogs for LINC01505 Gene
No data available for Paralogs for LINC01505 Gene
Variants for LINC01505 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2116516 | CNV | deletion | 18987734 |
| esv3573340 | CNV | loss | 25503493 |
| esv3891705 | CNV | loss | 25118596 |
| nsv521586 | CNV | loss | 19592680 |
Additional Variant Information for LINC01505 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01505
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01505 Gene
Disorders for LINC01505 Gene
Additional Disease Information for LINC01505
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC01505 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01505 Gene
Publications for LINC01505 Gene
- Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features. (PMID: 28128360) Lanzós A … Johnson R (Scientific reports 2017) 2 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
Products for LINC01505 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01505
- Origene Custom Protein Services for LINC01505
- Browse OriGene Inhibitory RNA Products For LINC01505
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01505
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01505
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01505
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01505
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01505
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01505
Sources for LINC01505 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB