Aliases for LINC01504 Gene

Subcategory (RNA class) for LINC01504 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01504 Gene

  • Long Intergenic Non-Protein Coding RNA 1504 2 3 5
  • LINC01504 2 168
  • HSALNG0071849 167
  • NONHSAG052554 92

External Ids for LINC01504 Gene

Summaries for LINC01504 Gene

GeneCards Summary for LINC01504 Gene

LINC01504 (Long Intergenic Non-Protein Coding RNA 1504) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01504 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01504 Gene

Genomics for LINC01504 Gene

GeneHancer (GH) Regulatory Elements for LINC01504 Gene

Promoters and enhancers for LINC01504 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J072304 Promoter/Enhancer 1.1 Ensembl ENCODE 523.7 +0.7 686 3.4 MYC POLR2A SP2 MYNN GABPA MAX SPI1 ZFHX2 SIN3A MAFK LINC01504 ZFAND5 TMC1 piR-55985-200 RF00017-7623 RF00017-7622
GH09J072314 Promoter/Enhancer 1.1 Ensembl ENCODE 65.1 +10.3 10318 3 TCF12 ZIC2 ZNF341 OSR2 ZNF263 FOSL2 NR3C1 SIN3A SCRT1 ZNF843 LINC01504 piR-55985-200 piR-30097-002 RF00017-7623 RF00017-7622
GH09J072292 Enhancer 0.8 ENCODE 62.2 -10.6 -10641 4.2 CTCF TCF12 EP300 RAD21 TRIM22 TEAD1 ZNF316 FOXA2 NFIC SMC3 LINC01504 RNA5SP285 lnc-GDA-3 ENSG00000233933 RF00017-7623 RF00017-7622
GH09J072300 Enhancer 0.5 FANTOM5 ENCODE 72.1 -3.9 -3878 0.4 ZNF24 ZNF316 RNA5SP285 LINC01504 ZFAND5 RF00017-7623 RF00017-7622
GH09J072144 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 8.7 -156.5 -156476 8.1 EP300 POLR2A GABPA ZBTB26 HDAC2 KMT2B KLF9 SMC3 KAT7 MXI1 GDA LINC01504 piR-41405-139 piR-57133-615 RF00017-7623 RF00017-7622 L13304-038 L13715-030
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01504 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01504 Gene

Genomic Locations for LINC01504 Gene
chr9:72,305,017-72,356,721
(GRCh38/hg38)
Size:
51,705 bases
Orientation:
Plus strand
chr9:74,920,328-74,958,126
(GRCh37/hg19)
Size:
37,799 bases
Orientation:
Plus strand

Genomic View for LINC01504 Gene

Genes around LINC01504 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01504 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01504 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01504 Gene

Proteins for LINC01504 Gene

Post-translational modifications for LINC01504 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01504 Gene

Domains & Families for LINC01504 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01504 Gene

Function for LINC01504 Gene

Phenotypes From GWAS Catalog for LINC01504 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01504 Gene

Localization for LINC01504 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01504 Gene

Pathways & Interactions for LINC01504 Gene

PathCards logo

SuperPathways for LINC01504 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01504 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01504 Gene

Drugs & Compounds for LINC01504 Gene

No Compound Related Data Available

Transcripts for LINC01504 Gene

mRNA/cDNA for LINC01504 Gene

12 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01504 Gene

No ASD Table

Relevant External Links for LINC01504 Gene

GeneLoc Exon Structure for
LINC01504

Expression for LINC01504 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01504 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01504

genes like me logo Genes that share expression patterns with LINC01504: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01504 Gene

Orthologs for LINC01504 Gene

Evolution for LINC01504 Gene

ENSEMBL:
Gene Tree for LINC01504 (if available)
TreeFam:
Gene Tree for LINC01504 (if available)

No data available for Orthologs for LINC01504 Gene

Paralogs for LINC01504 Gene

No data available for Paralogs for LINC01504 Gene

Variants for LINC01504 Gene

Additional dbSNP identifiers (rs#s) for LINC01504 Gene

Additional Variant Information for LINC01504 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01504

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01504 Gene

Disorders for LINC01504 Gene

Additional Disease Information for LINC01504

No disorders were found for LINC01504 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01504 Gene

Publications for LINC01504 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 54

Products for LINC01504 Gene

Sources for LINC01504 Gene