Aliases for LINC01503 Gene

Data sources for LINC01503 Gene:

RNA type for LINC01503 Gene

lncRNA

Aliases for LINC01503 Gene

External Ids for LINC01503 Gene

Summaries for LINC01503 Gene

GeneCards Summary for LINC01503 Gene

LINC01503 (Long Intergenic Non-Protein Coding RNA 1503) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01503 include Tongue Squamous Cell Carcinoma and Squamous Cell Carcinoma.

Additional gene information for LINC01503 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01503 Gene

Genomics for LINC01503 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01503 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01503 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01503 Gene

Latest Assembly
chr9:129,329,926-129,359,711
(GRCh38/hg38)
Size:
29,786 bases
Orientation:
Plus strand

Previous Assembly
chr9:132,099,202-132,109,756
(GRCh37/hg19 by Entrez Gene)
Size:
10,555 bases
Orientation:
Plus strand

chr9:132,094,579-132,121,817
(GRCh37/hg19 by Ensembl)
Size:
27,239 bases
Orientation:
Plus strand

Genomic View for LINC01503 Gene

Genes around LINC01503 on UCSC Golden Path with GeneCards custom track
LINC01503 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01503 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01503 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01503 Gene

Proteins for LINC01503 Gene

Post-translational modifications for LINC01503 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01503 Gene

Domains & Families for LINC01503 Gene

Gene Families for LINC01503 Gene

genes like me logo Genes that share domains with LINC01503: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01503 Gene

Function for LINC01503 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01503 Gene

Localization for LINC01503 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01503 Gene

Pathways & Interactions for LINC01503 Gene

PathCards logo

SuperPathways for LINC01503 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01503 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01503 Gene

Drugs & Compounds for LINC01503 Gene

No Compound Related Data Available

Transcripts for LINC01503 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01503 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075D319_9606 lncRNA 656 3

RefSeq: NR_120686,

LNCipedia: LINC01503:7,

NONCODE: NONHSAT220253.1,

URS000075D06E_9606 lncRNA 752 2

RefSeq: NR_120685,

LNCipedia: LINC01503:6,

URS0000EF5CAA_9606 lncRNA 2226 1

Ensembl: ENST00000665063 (view in UCSC) ,

URS0000EEC53D_9606 lncRNA 1633 1

Ensembl: ENST00000661745 (view in UCSC) ,

URS0000EED5F0_9606 lncRNA 1138 1

Ensembl: ENST00000654148 (view in UCSC) ,

LINC01503 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01503 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01503 Gene

No ASD Table

Relevant External Links for LINC01503 Gene

GeneLoc Exon Structure for
LINC01503

Expression for LINC01503 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01503 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01503

genes like me logo Genes that share expression patterns with LINC01503: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01503 Gene

Orthologs for LINC01503 Gene

Evolution for LINC01503 Gene

ENSEMBL:
Gene Tree for LINC01503 (if available)
TreeFam:
Gene Tree for LINC01503 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01503

No data available for Orthologs for LINC01503 Gene

Paralogs for LINC01503 Gene

No data available for Paralogs for LINC01503 Gene

Variants for LINC01503 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01503 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01503 Gene

Variant ID Type Subtype PubMed ID
dgv4528e59 CNV duplication 20981092
esv22510 CNV loss 19812545
esv2429314 CNV deletion 19546169
esv2556841 CNV deletion 19546169
esv2663166 CNV deletion 23128226
esv2677004 CNV deletion 23128226
esv2739082 CNV deletion 23290073
esv3891729 CNV loss 25118596
esv3891730 CNV loss 25118596
nsv1110063 CNV deletion 24896259
nsv471325 CNV loss 18288195
nsv615423 CNV gain 21841781
nsv831730 CNV loss 17160897
nsv951779 CNV deletion 24416366

Additional Variant Information for LINC01503 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01503
Leiden Open Variation Database (LOVD)
LINC01503

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01503 Gene

Disorders for LINC01503 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01503 Gene - From: LNC, COP, and GCD

Disorder Aliases PubMed IDs
tongue squamous cell carcinoma
  • squamous cell carcinoma of tongue
squamous cell carcinoma
  • epidermoid carcinoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01503

genes like me logo Genes that share disorders with LINC01503: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01503 Gene

Publications for LINC01503 Gene

  1. Long non-coding RNA deregulation in tongue squamous cell carcinoma. (PMID: 25045670) Gao W … Wong TS (BioMed research international 2014) 2 3 72
  2. An epigenomic approach to identifying differential overlapping and cis-acting lncRNAs in cisplatin-resistant cancer cells. (PMID: 29436261) Vera O … Ibanez de Caceres I (Epigenetics 2018) 2 3
  3. Super-Enhancer-Driven Long Non-Coding RNA LINC01503, Regulated by TP63, Is Over-Expressed and Oncogenic in Squamous Cell Carcinoma. (PMID: 29454790) Xie JJ … Koeffler HP (Gastroenterology 2018) 3 72
  4. EGR1-mediated linc01503 promotes cell cycle progression and tumorigenesis in gastric cancer. (PMID: 33145887) Ma Z … Ji J (Cell proliferation 2021) 3
  5. AR-induced long non-coding RNA LINC01503 facilitates proliferation and metastasis via the SFPQ-FOSL1 axis in nasopharyngeal carcinoma. (PMID: 32661324) He SW … Liu N (Oncogene 2020) 3

Products for LINC01503 Gene

Sources for LINC01503 Gene