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Aliases for LINC01499 Gene

Subcategory (RNA class) for LINC01499 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01499 Gene

  • Long Intergenic Non-Protein Coding RNA 1499 2 3 5

External Ids for LINC01499 Gene

Summaries for LINC01499 Gene

GeneCards Summary for LINC01499 Gene

LINC01499 (Long Intergenic Non-Protein Coding RNA 1499) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01499 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01499 Gene

Genomics for LINC01499 Gene

GeneHancer (GH) Regulatory Elements for LINC01499 Gene

Promoters and enhancers for LINC01499 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J041713 Enhancer 0.5 Ensembl ENCODE 600.7 -0.4 -433 1.8 SP1 LINC02741 LINC01499 ENSG00000255563
GH11J041877 Enhancer 0.8 Ensembl ENCODE 5 +164.5 164541 2.4 MAFK NFE2L2 CEBPB NFE2 JUND EP300 MAFG STAT3 LINC01499 ENSG00000254822 PIR31075
GH11J041798 Enhancer 0.4 ENCODE 6.1 +85.1 85112 2 ATF7 ATF2 LINC01499 ENSG00000254668 ENSG00000255279
GH11J041826 Enhancer 0.2 ENCODE 5.9 +111.8 111849 0.7 LINC01499 ENSG00000255279 ENSG00000254668
GH11J041852 Enhancer 0.2 Ensembl 5.9 +138.8 138767 1 LINC01499 ENSG00000255279 LOC105376639 ENSG00000254668
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01499 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01499 Gene

Genomic Locations for LINC01499 Gene
chr11:41,714,534-41,857,733
(GRCh38/hg38)
Size:
143,200 bases
Orientation:
Plus strand
chr11:41,736,118-41,857,992
(GRCh37/hg19)
Size:
121,875 bases
Orientation:
Plus strand

Genomic View for LINC01499 Gene

Genes around LINC01499 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01499 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01499 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01499 Gene

Proteins for LINC01499 Gene

Post-translational modifications for LINC01499 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01499 Gene

Domains & Families for LINC01499 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01499 Gene

Function for LINC01499 Gene

Phenotypes From GWAS Catalog for LINC01499 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01499 Gene

Localization for LINC01499 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01499 Gene

Pathways & Interactions for LINC01499 Gene

PathCards logo

SuperPathways for LINC01499 Gene

No Data Available

Interacting Proteins for LINC01499 Gene

Gene Ontology (GO) - Biological Process for LINC01499 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01499 Gene

Drugs & Compounds for LINC01499 Gene

No Compound Related Data Available

Transcripts for LINC01499 Gene

mRNA/cDNA for LINC01499 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01499 Gene

No ASD Table

Relevant External Links for LINC01499 Gene

GeneLoc Exon Structure for
LINC01499
ECgene alternative splicing isoforms for
LINC01499

Expression for LINC01499 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01499 Gene:

LINC01499
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01499 Gene

Orthologs for LINC01499 Gene

Evolution for LINC01499 Gene

ENSEMBL:
Gene Tree for LINC01499 (if available)
TreeFam:
Gene Tree for LINC01499 (if available)

No data available for Orthologs for LINC01499 Gene

Paralogs for LINC01499 Gene

No data available for Paralogs for LINC01499 Gene

Variants for LINC01499 Gene

Sequence variations from dbSNP and Humsavar for LINC01499 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000034964 -- 41,794,522(+) G/A intron_variant
rs1000036056 -- 41,732,922(+) A/T intron_variant
rs1000057530 -- 41,758,426(+) C/T intron_variant
rs1000087177 -- 41,836,124(+) A/G intron_variant
rs1000097639 -- 41,831,308(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01499 Gene

Variant ID Type Subtype PubMed ID
dgv1759n54 CNV loss 21841781
dgv1760n54 CNV loss 21841781
dgv1761n54 CNV loss 21841781
dgv1762n54 CNV loss 21841781
dgv1763n54 CNV loss 21841781
dgv208n67 CNV loss 20364138
dgv31n73 CNV deletion 24416366
esv2265810 CNV deletion 18987734
esv2367012 CNV deletion 18987734
esv2421441 CNV deletion 20811451
esv2426605 CNV deletion 19546169
esv2597822 CNV insertion 19546169
esv2657626 CNV deletion 23128226
esv2673046 CNV deletion 23128226
esv2678532 CNV deletion 23128226
esv2744399 CNV deletion 23290073
esv2744400 CNV deletion 23290073
esv2744401 CNV deletion 23290073
esv29380 CNV loss 19812545
esv3257495 CNV deletion 24192839
esv3303627 CNV mobile element insertion 20981092
esv3308165 CNV mobile element insertion 20981092
esv3331120 CNV insertion 20981092
esv3354993 CNV insertion 20981092
esv3378095 CNV insertion 20981092
esv3547642 CNV deletion 23714750
esv3547643 CNV deletion 23714750
esv3579487 CNV loss 25503493
esv3626093 CNV gain 21293372
esv3626094 CNV loss 21293372
esv3626096 CNV loss 21293372
esv3988 CNV loss 18987735
esv5121 CNV loss 18987735
esv7278 CNV loss 19470904
esv9722 CNV loss 19470904
esv999292 CNV insertion 20482838
nsv1035877 CNV loss 25217958
nsv1070024 CNV deletion 25765185
nsv1070952 CNV deletion 25765185
nsv1119871 CNV deletion 24896259
nsv1122608 CNV deletion 24896259
nsv1149449 CNV deletion 26484159
nsv1150222 CNV deletion 26484159
nsv512219 CNV loss 21212237
nsv554094 CNV loss 21841781
nsv554113 CNV loss 21841781
nsv819905 CNV loss 19587683
nsv825843 CNV loss 20364138
nsv832131 CNV gain+loss 17160897
nsv957881 CNV deletion 24416366
nsv958622 CNV deletion 24416366

Additional Variant Information for LINC01499 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01499

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01499 Gene

Disorders for LINC01499 Gene

Additional Disease Information for LINC01499

No disorders were found for LINC01499 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01499 Gene

Publications for LINC01499 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01499 Gene

Sources for LINC01499 Gene

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