Aliases for LINC01498 Gene

Subcategory (RNA class) for LINC01498 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01498 Gene

  • Long Intergenic Non-Protein Coding RNA 1498 2 3 5
  • LINC01498 2 5 165
  • NONHSAG012209.2 91
  • HSALNG0093824 164

External Ids for LINC01498 Gene

Summaries for LINC01498 Gene

GeneCards Summary for LINC01498 Gene

LINC01498 (Long Intergenic Non-Protein Coding RNA 1498) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01498 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01498 Gene

Genomics for LINC01498 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01498 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J108514 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +0.4 368 2.4 SP1 CREB1 PRDM10 ZNF629 IKZF1 NFKBIZ ZNF692 POLR2A BACH1 FOS FICD LINC01498 PWP1 SART3 KCTD10 ALKBH2 UBE3B ISCU
GH12J108473 Promoter 0.6 EPDnew 610.8 +42.3 42253 0.1 USF1 ATF4 ATF3 TOE1 LINC01498 FICD piR-30188-049 CMKLR1
GH12J108626 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.5 -117.5 -117458 13.4 RNF2 SP1 PRDM10 ZNF629 RFX1 LEF1 IKZF1 KDM1A ZNF692 POLR2A SELPLG piR-48759-066 SART3 PWP1 PRDM4 UBE3B CORO1C FICD LOC101929162 TMEM119
GH12J108609 Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 -100.3 -100292 15.4 SP1 GATAD2A CTCF PRDM10 RFX1 IKZF1 RFX5 KDM1A POLR2A BACH1 PRDM4 PWP1 TMEM119 SART3 ALKBH2 UBE3B FICD LINC01498 CORO1C ISCU
GH12J108301 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.3 +210.4 210362 7.7 TEAD4 IKZF1 CTCF ZIC2 NR2C1 ZNF341 SOX13 DPF2 HMBOX1 EGR1 lnc-WSCD2-1 CMKLR1 SART3 FICD LINC01498 ENSG00000257398 BTBD11 UNG CORO1C SELPLG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01498 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01498 Gene

Genomic Locations for LINC01498 Gene
chr12:108,434,130-108,515,988
(GRCh38/hg38)
Size:
81,859 bases
Orientation:
Minus strand
chr12:108,827,907-108,886,362
(GRCh37/hg19)
Size:
58,456 bases
Orientation:
Minus strand

Genomic View for LINC01498 Gene

Genes around LINC01498 on UCSC Golden Path with GeneCards custom track
LINC01498 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01498 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01498 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01498 Gene

Proteins for LINC01498 Gene

Post-translational modifications for LINC01498 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01498 Gene

Domains & Families for LINC01498 Gene

Gene Families for LINC01498 Gene

genes like me logo Genes that share domains with LINC01498: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01498 Gene

Function for LINC01498 Gene

Phenotypes From GWAS Catalog for LINC01498 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01498 Gene

Localization for LINC01498 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01498 Gene

Pathways & Interactions for LINC01498 Gene

PathCards logo

SuperPathways for LINC01498 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01498 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01498 Gene

Drugs & Compounds for LINC01498 Gene

No Compound Related Data Available

Transcripts for LINC01498 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01498 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000557875_9606 lncRNA 2984 4

Ensembl: ENST00000502160 (view in UCSC) ,

LncBook: HSALNT0194574,

LNCipedia: LINC01498:1,

NONCODE: NONHSAT030548.2,

URS00002C663C_9606 lncRNA 549 4

HGNC: 51164,

RefSeq: NR_120483,

LNCipedia: LINC01498:2,

NONCODE: NONHSAT030550.2,

URS0000EF5963_9606 lncRNA 900 1

Ensembl: ENST00000670674 (view in UCSC) ,

URS00008BB432_9606 lncRNA 516 3

LncBook: HSALNT0194580,

LNCipedia: LINC01498:3,

NONCODE: NONHSAT030549.2,

URS00009B2F83_9606 lncRNA 3261 1

NONCODE: NONHSAT163965.1,

LINC01498 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01498 Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01498 Gene

No ASD Table

Relevant External Links for LINC01498 Gene

GeneLoc Exon Structure for
LINC01498

Expression for LINC01498 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01498 Gene

genes like me logo Genes that share expression patterns with LINC01498: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01498 Gene

Orthologs for LINC01498 Gene

Evolution for LINC01498 Gene

ENSEMBL:
Gene Tree for LINC01498 (if available)
TreeFam:
Gene Tree for LINC01498 (if available)

No data available for Orthologs for LINC01498 Gene

Paralogs for LINC01498 Gene

No data available for Paralogs for LINC01498 Gene

Variants for LINC01498 Gene

Additional dbSNP identifiers (rs#s) for LINC01498 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01498 Gene

Variant ID Type Subtype PubMed ID
dgv2853n54 CNV loss 21841781
dgv2854n54 CNV loss 21841781
dgv312e199 CNV deletion 23128226
esv1963602 CNV deletion 18987734
esv2511671 CNV deletion 19546169
esv2676279 CNV deletion 23128226
esv27968 CNV loss 19812545
esv28420 CNV loss 19812545
esv3630706 CNV loss 21293372
esv3630707 CNV loss 21293372
nsv560103 CNV loss 21841781
nsv560111 CNV loss 21841781
nsv821132 CNV deletion 20802225

Additional Variant Information for LINC01498 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01498

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01498 Gene

Disorders for LINC01498 Gene

Additional Disease Information for LINC01498

No disorders were found for LINC01498 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01498 Gene

Publications for LINC01498 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC01498 Gene

Sources for LINC01498 Gene