Aliases for LINC01497 Gene

Subcategory (RNA class) for LINC01497 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01497 Gene

  • Long Intergenic Non-Protein Coding RNA 1497 2 3 5
  • LINC01497 2 170
  • HSALNG0118447 169
  • NONHSAG022633 94

External Ids for LINC01497 Gene

Summaries for LINC01497 Gene

GeneCards Summary for LINC01497 Gene

LINC01497 (Long Intergenic Non-Protein Coding RNA 1497) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01497 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01497 Gene

Genomics for LINC01497 Gene

GeneHancer (GH) Regulatory Elements for LINC01497 Gene

Promoters and enhancers for LINC01497 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J069960 Enhancer 0.7 Ensembl ENCODE 766.7 +0.2 218 2 ATF7 SCRT2 SCRT1 ZSCAN29 POLR2A ATF2 LINC01497 ENSG00000199801 lnc-ABCA5-10
GH17J069947 Enhancer 0.7 Ensembl ENCODE 23.7 -14.3 -14263 0.6 NFE2 MAFG ZNF592 ZNF513 CBFA2T3 EMSY LINC01497 ABCA5 piR-31199-143 lnc-ABCA5-10
GH17J069967 Enhancer 0.4 Ensembl ENCODE 24.8 +6.4 6397 1.3 FOS LINC01497 ENSG00000199801 lnc-ABCA5-10
GH17J069869 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 9.9 -91.0 -90967 3.2 MAFK POLR2A ZNF316 FOS JUNB JUN BATF JUND GLIS1 MAFF LINC01497 piR-49097-049 piR-31199-143 LINC01483
GH17J069951 Enhancer 0.4 ENCODE 20.6 -10.3 -10293 0.2 ZNF384 PKNOX1 NR2C1 CBFA2T3 LINC01497 piR-31199-143 lnc-ABCA5-10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01497 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01497 Gene

Genomic Locations for LINC01497 Gene
chr17:69,961,568-69,994,845
(GRCh38/hg38)
Size:
33,278 bases
Orientation:
Plus strand
chr17:67,957,848-67,979,679
(GRCh37/hg19)
Size:
21,832 bases
Orientation:
Plus strand

Genomic View for LINC01497 Gene

Genes around LINC01497 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01497 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01497 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01497 Gene

Proteins for LINC01497 Gene

Post-translational modifications for LINC01497 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01497 Gene

Domains & Families for LINC01497 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01497 Gene

Function for LINC01497 Gene

Phenotypes From GWAS Catalog for LINC01497 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01497 Gene

Localization for LINC01497 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01497 Gene

Pathways & Interactions for LINC01497 Gene

PathCards logo

SuperPathways for LINC01497 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01497 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01497 Gene

Drugs & Compounds for LINC01497 Gene

No Compound Related Data Available

Transcripts for LINC01497 Gene

mRNA/cDNA for LINC01497 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(13) RNACentral transcripts :
(7) LncBook transcripts :
(11) LNCipedia transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01497 Gene

No ASD Table

Relevant External Links for LINC01497 Gene

GeneLoc Exon Structure for
LINC01497
ECgene alternative splicing isoforms for
LINC01497

Expression for LINC01497 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01497 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01497 Gene:

LINC01497
genes like me logo Genes that share expression patterns with LINC01497: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01497 Gene

Orthologs for LINC01497 Gene

Evolution for LINC01497 Gene

ENSEMBL:
Gene Tree for LINC01497 (if available)
TreeFam:
Gene Tree for LINC01497 (if available)

No data available for Orthologs for LINC01497 Gene

Paralogs for LINC01497 Gene

No data available for Paralogs for LINC01497 Gene

Variants for LINC01497 Gene

Sequence variations from dbSNP and Humsavar for LINC01497 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000057292 -- 69,965,791(+) G/A/T intron_variant
rs1000160759 -- 69,971,856(+) G/T intron_variant
rs1000211188 -- 69,971,583(+) A/G intron_variant
rs1000509283 -- 69,970,582(+) T/A intron_variant
rs1000563158 -- 69,970,247(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01497 Gene

Variant ID Type Subtype PubMed ID
dgv1801e59 CNV tandem duplication 20981092
esv2473047 CNV deletion 19546169
esv2758702 CNV loss 17122850
esv3399187 CNV duplication 20981092
nsv1142228 CNV tandem duplication 24896259

Additional Variant Information for LINC01497 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01497

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01497 Gene

Disorders for LINC01497 Gene

Additional Disease Information for LINC01497

No disorders were found for LINC01497 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01497 Gene

Publications for LINC01497 Gene

No publications were found for LINC01497 Gene.

Products for LINC01497 Gene

Sources for LINC01497 Gene